Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02448 ATGAACGAAAGTTGGAGTGAGGgaaaaaggagcatgaattacaaggaggaggaagagtacgaagaagaggaggaagaagagagtgaaggttatggagaagatgataggaagaagaGGGTGGTGACTACTAAGAGAGGGTCCAAAGCTGGAGGCTCAGTGCCACCTTCTTGTCAAGTGGATGGTTGTAATGCTGATCTAAGTGATGCTAAGCCTTATCACAGGCGTCACAAAGTTTGTGAGTACCATGCCAAGGCTCCTGCAGTACTCATTGCAGACCAGCACCAAAGATTTTGCCAACAATGTAGTAGGTTTCATGAGCTATCGGAATTTGATGATTCAAAAAGGAGTTGCAGAAGACGTTTGGCTGGACATAATGAAAGGCGTCGCAAAAATGCATCTGAGTATCATGGACTTTGA 417 0.3525 MNESWSEGKRSMNYKEEEEYEEEEEEESEGYGEDDRKKRVVTTKRGSKAGGSVPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIADQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEYHGL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02448 138 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Cca08g02448 138 PIRSF SBP 4 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Cca08g02448 138 Pfam SBP domain 57 130 IPR004333 GO:0003677
Cca08g02448 138 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Cca08g02448 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 132 IPR044817 GO:0003677
Cca08g02448 138 Gene3D - 47 118 IPR036893 GO:0003677|GO:0005634
Cca08g02448 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 132 - -
Cca08g02448 138 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02448 Cca-Chr8 58662369 58664956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02448 1 134 SBP-box Gene Family AT2G33810 56.716 1.58e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca08g02448 SBP 3.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02448 - - gmx:100782285 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02448 08 58662369 58664956 Cca08g02448 08 58662369 58664956 ECH
Cca10g01118 10 14194522 14196032 Cca08g02448 08 58662369 58664956 ECH