Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02445 ATGTCTATCCCCGATTCTCCCCAAGGCGCCGATACCGATTCCGATCCATCTCTCGTagaagaaatagaggaggaagtagaagaagaagaagaagaagaggaagaagaagaagaggtcgaggaggaagtagaagaagaagaagaagaagaggggggggaggaggaggaggaggaggttgaggaggaagtagaagaagaagaagaggtcgaggaggaagtagaagaggaggaggttgaggaagaagtagaagaggttgaagaagaagtggaagaggaagaagaagagggagaacaaggagaagaacaggaagtagaagaagtcgaagaggaggaagaagaagaagacgatgaacaacaacaacaacaacaaccacagcaacaagaagcagtagaggagaaggaggatgatcaattactgcaacaagaacaagagcaaacagcagtgaaggagaaggaggaagaacaaCCGCTACATCAACTACAACCGGAATCGGTGGAGACGAAGGAGGAGGGCAAAACGGTGGTGCCAGATTCTCCTCCCGATGCCGATAAGGATCGCAAAGATTCAAGCCAGCATATAGAGTCTGAGGGGCAAGAGAAAAGCCTGGAGCCAGTTTTTTCCGTGGCTGAAAATCTTGAATTAATGCCACCATCTAGTATGCATTGCATGGAAGAGAATGATGTCATACTCAAAACATCTGTTCCTTCATTTGAGATGCTAACATTGAAAAAGGAAGAGCTTCACTTGAAATCTGAAATTTCATGTAATTTAAAATCAAGAGAAAATCTGACTTCTGTTGAAGATAGCAAAAGTCATGGACTAGATGTTGTTGAAGAAAATGTTGGATCCCTTCTACAGAAGGAAACATTTGGAGGATACAATGAGCCAGGTTACAATAGCAAAGCTAATTTATGTGGTGATACTGATATTGATTCTACGGCCAGGGCCACCGAATCATCTAGTGGTACTGGACAAGATATGGTTATTGGCCTCCTACGGAGAGATTGCCTTGATGAGGATGCTAATGGTGGTCAGAATTCTAGGAATAAAATCACGCAGTTGGAGATGGAGTCAAGGGATGATGTGAAACAAATGACATTAAGGACTAGAAGTCTGTCTCCAAGTGCTGAGATTAAAGACAGAAACAAACGCCCCAGAATTGTATGTGATTTTTTTGCTAAAGGATGGTGTATCCGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGAACAATACTGACCAGGAGGCTGAAGCAGACTTAGTTACTGCACATCAGAAGAGGGAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTGAGAGATTAAGGATGAATGAGCAAGAAGCAAGTCCTAGTTGGCATCCATCTCAAGAAAAACAGAAGTTTCATCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTGCATCAAACAATTATTTCAGCCCAAATCTTCCCTTGAATTCTACCCGTGCTGATGGAATGACTACTTTTTGGAACCAACATATGTACAAAGGATATACTTCAACAGTTTTGAGCCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCAGCCTCAAGCATGTCACTCTCCCACCAGATTCCGGCCCAATCAGGACGGTCATTTCCTTTTAGTTCATCTTTGGGGGCTGGTAATATGGATTCTCAAAAGCTTTTGAAAACTAACAAAGAATATCTCACCTCTAAGTCCACTTTCTCTGGTTCAGGGCAGGAAGATTTGCCTCTGGTTAGTTCATCTAGGGTTTCATCATTTCCTACTGGATATAAATCAAAAATCTGTTCTTATGACTGGGAACCTTCTGTGCCCTTTCGACCATCCTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCCAATATAGGAGATGGATCTTTGAAGGCTTCCCTTTTAATTCATGGATCAAATGCACAGGCTTCATCACAGGTTCGGGCATATGGTGATTCTGATGTAGTTGGGAAACACACGTCCAATCTTAATGATGCCAAAAGTTCTGTATCTTCTCATAACAAATTTTGTGAAAATGAGACACATAAAAATTGTGATCCTCATGAAAAGGATTGTTTTGCACCTGAAACAGAGATAACATCAGGTACTTACCTAAATAATCAAAATGGTAAAATGGGCACGGGACAACATAACTTTGGTGTTGCAGATAGTACAAAGAAAGAGAGACATTTGACTGAGCGTGAGGCTAGACATTATGGTGGTGAAGGATCGAGACACAAAAAGAAGAGAATAGGTAAGGATAAGAAAGATCATGAAATGGATGTTGACTTTCAGACAGATGGCAGCATGCAGAAGGAACCAAAGGCACTAAAAATATTCCGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGCTTGGCACGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTCAAAAAATCAGTTGACAAGGTTGTTAGCACCTTAGATCCACAGCAGATTCCGACCATAGATACTGCTAAGCAGTATGTTTCTTCAAGTCGGGTGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAATCTTGA 2637 0.3432 MSIPDSPQGADTDSDPSLVEEIEEEVEEEEEEEEEEEEVEEEVEEEEEEEGGEEEEEEVEEEVEEEEEVEEEVEEEEVEEEVEEVEEEVEEEEEEGEQGEEQEVEEVEEEEEEEDDEQQQQQQPQQQEAVEEKEDDQLLQQEQEQTAVKEKEEEQPLHQLQPESVETKEEGKTVVPDSPPDADKDRKDSSQHIESEGQEKSLEPVFSVAENLELMPPSSMHCMEENDVILKTSVPSFEMLTLKKEELHLKSEISCNLKSRENLTSVEDSKSHGLDVVEENVGSLLQKETFGGYNEPGYNSKANLCGDTDIDSTARATESSSGTGQDMVIGLLRRDCLDEDANGGQNSRNKITQLEMESRDDVKQMTLRTRSLSPSAEIKDRNKRPRIVCDFFAKGWCIRGSSCSFLHIKDTVNNTDQEAEADLVTAHQKRELKVEEGVRENVERLRMNEQEASPSWHPSQEKQKFHLRDNLFPENRFAFSASNNYFSPNLPLNSTRADGMTTFWNQHMYKGYTSTVLSHSPNSSLVTQFPASSMSLSHQIPAQSGRSFPFSSSLGAGNMDSQKLLKTNKEYLTSKSTFSGSGQEDLPLVSSSRVSSFPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIHGSNAQASSQVRAYGDSDVVGKHTSNLNDAKSSVSSHNKFCENETHKNCDPHEKDCFAPETEITSGTYLNNQNGKMGTGQHNFGVADSTKKERHLTEREARHYGGEGSRHKKKRIGKDKKDHEMDVDFQTDGSMQKEPKALKIFRAALVDHVKELLKPAWHEGRLSKDAHIMIVKKSVDKVVSTLDPQQIPTIDTAKQYVSSSRVKIAKLVNGYVNKYGKS 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02445 878 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 165 878 - -
Cca08g02445 878 Coils Coil 18 121 - -
Cca08g02445 878 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 165 878 - -
Cca08g02445 878 SUPERFAMILY CCCH zinc finger 383 407 IPR036855 GO:0046872
Cca08g02445 878 ProSiteProfiles Zinc finger C3H1-type profile. 383 410 IPR000571 GO:0046872
Cca08g02445 878 Gene3D - 375 451 - -
Cca08g02445 878 MobiDBLite consensus disorder prediction 16 119 - -
Cca08g02445 878 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 407 IPR000571 GO:0046872
Cca08g02445 878 MobiDBLite consensus disorder prediction 757 778 - -
Cca08g02445 878 MobiDBLite consensus disorder prediction 128 199 - -
Cca08g02445 878 SMART c3hfinal6 384 409 IPR000571 GO:0046872
Cca08g02445 878 MobiDBLite consensus disorder prediction 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02445 Cca-Chr8 58607440 58617456 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g02445 zf-CCCH 7.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02445 - - gmx:100819734 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02445 08 58607440 58617456 Cca08g02445 08 58607440 58617456 ECH