Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02443 atgctaattgctcattgctcattgctcatggcctcttcctcCTCTTCTCGCGACGGACACTACAGAGGGGTTAGGAAGCGACCCTGGGGACGCTACGCCGCTGAAATACGCGACCCCTGGAAGAAGACACGTGTCTGGCTCGGCACCTTCGACACGCCCGAGGAGgccgccctcgcctacgacgccgccgcccgctccctccgcggcgccAAGGCCAAAACCAACTTCCCTCCGCCTCCGCCGCTCTGCCTCGACCTCAACGCGCCTTCCTCCGATCACCACCGCTGGCCGCCCCTCCCCTCGCGCGCCCTCGTCCTCACCGAGTTCCTCCACACCGCCGTTCTCAAGGACATCGATccgccgctcccgcctccctccgccgtccctcaccgtcgcggcgaggcctccgccgcTGTTCAGGTGGTGGAGAGCTCACACTCGCAGACCGCGTCGTTTTTGGGACTGGTCCGGCGCGGCATCCCCATCGACTTGAACGAGCCTCCACCCTTGTGGCTATGA 519 0.4624 MLIAHCSLLMASSSSSRDGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDAAARSLRGAKAKTNFPPPPPLCLDLNAPSSDHHRWPPLPSRALVLTEFLHTAVLKDIDPPLPPPSAVPHRRGEASAAVQVVESSHSQTASFLGLVRRGIPIDLNEPPPLWL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02443 172 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Cca08g02443 172 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Cca08g02443 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 14 162 - -
Cca08g02443 172 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Cca08g02443 172 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Cca08g02443 172 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Cca08g02443 172 CDD AP2 20 76 IPR001471 GO:0003700|GO:0006355
Cca08g02443 172 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 162 - -
Cca08g02443 172 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Cca08g02443 172 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02443 Cca-Chr8 58568893 58570421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02443 10 172 AP2-EREBP Transcription Factor Family AT1G28360 49.741 2.47e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g02443 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02443 - - gmx:100798369 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02443 08 58568893 58570421 Cca08g02443 08 58568893 58570421 ECH