Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02442 ATGGCGCCCAGGGATAAGACGCCAGCTCTTAAGCCCAACAACGCCAACGCCGGGGCCAAGGAGCTGCATTTTCGCGGAGTCAGGAAGAGGCCGTGGGGGAGATACGCCGCCGAGATCAGAGATCCCGGTAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACGGCCGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCACGTGAGTTCCGCGGTCCCAAGGCCAAGACCAACTTCCCTCTCCCCTCCGATAATCTCAAGAACCAGAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTcgccgccgattcctccccgccgctcgacctcaatctcgcccccgcctccgcGCGTTTCCCCTTCCACCACCAATTCCCGCCCATCGCCGCCGTTTTCCCCGGCACGGTGCCTCCCTCGAACCAGGTCTTCTACTTCGACGCCGTCCTACGCGCCGGCATGGGCGCTCCCCGCGGCTTTGCTTTCGGTTACAATCAGCATCCGGCGGCGGCGAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCACAATGAAGGCGATGTTAAGGTCGCGGGTTCTAGAATCTTGGATCTCGACCTTAACCACCCTCCTCCCCAAGAGATCGCATGA 648 0.5818 MAPRDKTPALKPNNANAGAKELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPSDNLKNQSPSQSSTVESSSRDRDVAADSSPPLDLNLAPASARFPFHHQFPPIAAVFPGTVPPSNQVFYFDAVLRAGMGAPRGFAFGYNQHPAAASDSDSSSVIDLNHNEGDVKVAGSRILDLDLNHPPPQEIA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02442 215 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Cca08g02442 215 PANTHER ERF DOMAIN PROTEIN 9-RELATED 10 191 - -
Cca08g02442 215 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Cca08g02442 215 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Cca08g02442 215 MobiDBLite consensus disorder prediction 81 101 - -
Cca08g02442 215 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Cca08g02442 215 MobiDBLite consensus disorder prediction 72 115 - -
Cca08g02442 215 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Cca08g02442 215 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Cca08g02442 215 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Cca08g02442 215 MobiDBLite consensus disorder prediction 1 23 - -
Cca08g02442 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 191 - -
Cca08g02442 215 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02442 Cca-Chr8 58550262 58551902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02442 20 211 AP2-EREBP Transcription Factor Family AT5G44210 44.162 4.73e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g02442 AP2 8.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02442 K09286 - gmx:100803173 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02442 08 58550262 58551902 Cca08g02442 08 58550262 58551902 ECH
Cca04g01450 04 19900291 19901362 Cca08g02442 08 58550262 58551902 ECH
Cca04g01153 04 13245131 13246170 Cca08g02442 08 58550262 58551902 ECH