Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02434 ATGGGGATAGACTACTATGAGATTTTGGAGGTTGACAAGAATGCCACAGATGAAGAATTGAAGAAAGCCTATAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAATCCAAACAATAAGAAAGAGGCTGAGATTAAATTCAAACAGATATCTGAAGCCTACGAGGTTCTAAGTGATCCTCAGAAGAGAGCAATTTATGATCAGTATGGAGAAGGTGGCCTTAAAGGTGGAATGTCACCGCCGGATGCAGGTTTTGCTTCATTCTTCCAAACTGGGGATGGCCCAGCAGCGTTTAGGTTCAATCCCAGAAATGCAAACAACATATTTGCAGAGGTGTTTGGGTGTTCAAGTCCATTTGGAGGAACGGGAATGGGGTTTGGCTGTGGTGGGAGAGGCACAGGCATGAGGGGTGGAACATGGGTGTCAAGGTCCTTTGGTGGAATGTTTGGCAATGACATGTTTGGAGAAGGCAGGCACATGAATCAAGGTCCACGCCGCAAGGCACCTTCCATTGAAAATGCATTACTTTGCAGCCTTGAGGAGCTCTATAAGGGGACTACCAGAAAGATGAAAATCTCCAGGGAAGTTACACTCGCAAGCGGGAGAACTTTTCCTGTGGAGGAAATTTTAAACATTGAAATCCATCCGGGCTGGAAAAAGGGAACCAAAATCACTTTCCCAGAGAAAGGAAATCAGCAGCCAAATGTCATTGCTGCAGATCTTGTGTTTATTATTGATGAGAAACCTCACAGTGTGTTTACAAGAGATGGTAATGATTTGGTTGTTACACAAAAGATATCACTTAGAGAAGCTGAAGCTCTAACAGGCTACACCATCCAACTTACAACTCTAGATGGCAGGGATCTGAACATTGCCATAAACAATGTGACTGATCCAGATTATGAAGAAGTGATCACCGGAGAAGGTATGCCAATTTCTAAAGATCCTTCAAAGAAGGGTAACCTTAGGATCAAATTTAACATCAAATTTGCAGATATCGTTGATGCCAGACATGAAAGCCAAAGTTAA 1029 0.4295 MGIDYYEILEVDKNATDEELKKAYRKLAMKWHPDKNPNNKKEAEIKFKQISEAYEVLSDPQKRAIYDQYGEGGLKGGMSPPDAGFASFFQTGDGPAAFRFNPRNANNIFAEVFGCSSPFGGTGMGFGCGGRGTGMRGGTWVSRSFGGMFGNDMFGEGRHMNQGPRRKAPSIENALLCSLEELYKGTTRKMKISREVTLASGRTFPVEEILNIEIHPGWKKGTKITFPEKGNQQPNVIAADLVFIIDEKPHSVFTRDGNDLVVTQKISLREAEALTGYTIQLTTLDGRDLNIAINNVTDPDYEEVITGEGMPISKDPSKKGNLRIKFNIKFADIVDARHESQS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02434 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cca08g02434 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cca08g02434 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cca08g02434 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cca08g02434 342 Gene3D - 250 331 - -
Cca08g02434 342 CDD DnaJ 4 59 IPR001623 -
Cca08g02434 342 CDD DnaJ_C 177 330 - -
Cca08g02434 342 Pfam DnaJ C terminal domain 173 330 IPR002939 -
Cca08g02434 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 336 IPR008971 GO:0006457|GO:0051082
Cca08g02434 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cca08g02434 342 SMART dnaj_3 3 62 IPR001623 -
Cca08g02434 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 261 IPR008971 GO:0006457|GO:0051082
Cca08g02434 342 SUPERFAMILY Chaperone J-domain 3 99 IPR036869 -
Cca08g02434 342 Gene3D - 170 248 - -
Cca08g02434 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 332 - -
Cca08g02434 342 Coils Coil 6 26 - -
Cca08g02434 342 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 332 - -
Cca08g02434 342 Gene3D DnaJ domain 3 122 IPR036869 -
Cca08g02434 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cca08g02434 342 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02434 Cca-Chr8 58457059 58459840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02434 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 1.77e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02434 K09510 - gmx:100794650 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02434 08 58457059 58459840 Cca08g02434 08 58457059 58459840 ECH