Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02433 ATGCCTCGTACAAGAAGACATGTTGTGGCTAGGTGTCGATCCACACCGAATGAAGAAAACAATTCCTCCATGGGCACTCATCAAAGTGTAGAGGTTCAACTACCTCAAAGTGAGCCCATGCCAAACATTGAATCATCTTCTCAAGATGACATACATGCTACTTCGCCCACTTGCACCGGATCTAGGAGGTCGACACACCATGAATCTGATGTAGTTGAAGATTCATCAGTGGCTCAGAAAAAATCCCCTACCTATTGGAATGttaatgttattaCACGTCTTCTCTCAGCCCAGCCATCTTTGCGAGAGATCACTGCATCTCAGGTCACTGTTAATGTGGTGTGGCCTTCACTTCGAAACAAAATAGGCCATGTCTTCTCTCTGTTGACAATGGCAAGGACATTCCATGAATATCCTTTTCTTCCAAACCAGTCTGGCATTAGATCTGATGTTTTTGGACAACTGAACCTACCTCATTTACATGATCCAATTGAGGCTCCCTCCAGAACTCCTTTTCCCCTTGGAAATGAACAGCAACCCAGAATTCATGCTCCCCAAGGTCATTCTTCTCGTGTTCGTCTTTTGTCTCAACAGGAAAAGCAAGTGATTCCCTATCCATCTCCTCCTCGAGATAATGATGGAGAACCCAAAAGGGAACCTCACACAAACATAACCAATACTGGAATGAACTCTCACTTTTCTGATCACCCAATTATTGGACAAGAAAATTCTTATGCCTTACCTGGTGGCCAAGTTAACCATAACGATGCAATATTGAGGATGGAGAGGAAACGGAAGAGTGATGAAGCCAGAGTTGCTAAGGAAGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAGCAAGATAACCTCAGACGAAAGAGCGGAAGGCAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGTTGATACGTGAGAAACAACGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGACGGGAAATGGAACGAAGGGAAAAATTCTTGTTGAAAGAACATTTAAGAGCCGAGAAAAAGAGGCTAAAGGAAGAGATTCGCAAGGAGAAAGAGGAAGAGAGGAAGAAAGCTGCCCTTGAGAAGGCAAATGCTCGTAGAATGGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCTTCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTATTTCCACCCAAAAGTGTAAAGCTGAGAAAGCCATTTGCCATCCAACCCTGGATTAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTCTTGATTACTTTTGCTGATGTCCTTGAATTATGGCCTTTTACTATTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCTCTGCTCAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGAATAGGGATGAACCAGAATGGAGCCGCTAATCCTGGAGGTGGGCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGATATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCGGAAATTTTCCGGCAGTTAGTACTGTCTGCAGGATTAGGACCGCAGCTGAAGAAAAGAAATATTACATGGTCCTATGCAATTGATAAAGACGAGGGAAAAAGTTGCGAAGATATCATTTCTACACTCCGTAATGGCTCAGCAGCTGAAAGTGCCGTGGCCAAAATGCAAGAGAGAGGTCTGTTAGCTCCTCGAAGATCAAGGCACAGGTTGACTCCTGGAACAGTTAAATTTGCAGCTTTTCATGTTCTCTCACTTGAGGGTAGTAAGGGTTTGACAGTACTAGAGCTTGCTGATAAAATCCAGAAATCTGGTCTTCGGGACTTGACAACCAGCAAGACACCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATATTGTGTTCGGACTGCATTCAGAAAGAATCCTGCTGATGCTGAGAACATTCTTTCAGAAGCAAGAAAGAAAATTCAAATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAGAGAGAAGAGGAATCAGAAAGTGACGAAGTTGACGAGGATCCTGAAGATGATGATTTAGTAAATCCTTCAAGTGCAAACCAAAATTCTGAACAGTATGATGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGGTCACAATGTAGATCTTATTCAAAATGAGTTTGATACGGATCTACCTTGTTTTCCTAAGAATGTTTCTACAGATGCTGATTGTCTCAGTTCTGTCACTCCACAACCTGTTGCTTGTGAAGATTTAAATGCTGGAAATCTTGTTCAAGATAATATGGAAATTGATGAAAGCAAATCAGGAGAGTCCTGGATTCTAGGGCTTGCTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTTTAAATGCTCTTGTCGCGTTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGACTGGAATCAGCGAATGCTCTGAAGAAACAAATGTGGGCTGAAGCACAGATAGATAAAGTTCGTCTGAAAGATGATATTATTGGTAAATCGGATTTTCCATCAGTTGCTGGGAATAAGGTTGAGACACAATACACATATCCAGCTGTGGGGGGCAACCAAAGTCCAATGCTTGACATTAATATTAACAATATTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAGGGAGCTCTTGTTGCACAGAACATGCCTATGGAGAAGTCCTCGTCAATTCAAGATTTTGGCACGGGTACTTGTGCAGACATCCCTCATACTCAGGTACCTGCACAATATTCGAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATGGCAGAGGAGATGTATGTTTACAGGTCTTTACCCCTTGGCCAAGATCGAAGACGAAATCGATATTGGCAATTTGTTGCCTCTGCTTCCAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATATCATGATGGGAAGTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGACGTCATTGGATTCTCGCGGGATCAGGGAATCTCATTTGCGCTTGATGTTGCAAAAGATTGAGAATTCCTTTAAAGAAAATGTTCGAAAGAAGAATGCACGATGTGCCAAGAATGGAAGTAGAGGCGAAGTTTCTATTAAAATTGAAGCTAATGAAACATATTCTATCCCTGACCACAATGCTGGATCCGACAGTCCTAGCAGTACCCTTCATGACTTGAACCCTGATATATCTGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAACTGAGTGTGAGAAGAAATCTGCCTGGAGAAGATATCAAGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCAGTTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATGCCTGCCTCAATCCTTATTTTGTTGAAGACTCCCATTGCAATTCCTGCCACCGGACTTTTCCCTCGAATACTGGATTTAATTTTTCTAAACATGCATTTCAGTGTCGTGATAAGTTATCCAAAGATAATTGTTTTTTGGAATATCCGCTTCCCTTGCGAACAAGATTGCTTAAGGTCCTGTTGGCTTTTATGGAGGTATCTGTTCTATCTGAAGCATTTGGAACAAGTTGGACTGATGATATGAGGAAGCACTGGGGTGTAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGACCCTATTTGAGAAAGCACTACGGCGAGATTTTCTGTCCTCGAACTTCTCTACAACAGATGAATTGTTGGGATTAAGCAGTATGTCAGAAAGCTCTGTGCAGGCTTCAACTGATCCTGAATCTGTTGCTGTGCTTCCATGGGTTCCACTAACCACTGCAGCTTTGTCTCTCAGGCTTTTTGAGATTGATTCATCCATCAGCTACGGAAAGTTTGAGGAACATGAGCCTTGTGAGGAGAAAGAAGCAAGAGAATACATAAAGCTTCCATCGAGATATGCTCACACAAAATCTAATAGGGAGGTTGAACCAGCAGAATTTGACCATATTGAATTCACTAAAGATAAATCTGTTCATAAGAAAATTGTACGAAGTGGCAATAAACGGGGACGGGGGACTAATGAACAAGGTCGGGGTAAAAAGCTGGCTAAAAGAGTGTACAATTCCAAGCGAGATGGTGGACGCAAGAATGCTAAGGTCACTGACAATCTAAGTCACAAATTAAAACATCAGGCTCGAGGAACACAAGGACAAGGTGCTGGGCGAGGTCGTCGGACAGTAAGGAAACGGAGAGTGGGAAAGAGAGCTGTTGAAGATTTGTTGCTGGGTCATACGACAGCCAGTCATAGCTCCAAGATTGATAGGGAACCGTTGAGAAACTTAGATGAGGAATGGGATGGCGAAAAGGCAAGTCCCATGACTCCTGTACACATTGGGGTTGTTGACAATAGTAACAGTGCTGAAGAGGTGGAATCTGATGACGACAATGCTCAAGCTGTGGAATATGATCAAGGAAACTGGGAAGTAGGTTTTAATGGTGTTCCCCCCAACAGATGGAGTAGGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTTTGAAGATGATAATGATAATGAGAATGGCATCGAAGAGAATGAATTGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGGATAGCAAATAGGGTAGTAAATGTTGGAGGGTCAGACTCGGCTTTGTCTGAAGATTCTTCTGATTAG 4953 0.4191 MPRTRRHVVARCRSTPNEENNSSMGTHQSVEVQLPQSEPMPNIESSSQDDIHATSPTCTGSRRSTHHESDVVEDSSVAQKKSPTYWNVNVITRLLSAQPSLREITASQVTVNVVWPSLRNKIGHVFSLLTMARTFHEYPFLPNQSGIRSDVFGQLNLPHLHDPIEAPSRTPFPLGNEQQPRIHAPQGHSSRVRLLSQQEKQVIPYPSPPRDNDGEPKREPHTNITNTGMNSHFSDHPIIGQENSYALPGGQVNHNDAILRMERKRKSDEARVAKEVEAYEMRMRKELEKQDNLRRKSGRQDRERRKEEERLIREKQREEERSKREQRREMERREKFLLKEHLRAEKKRLKEEIRKEKEEERKKAALEKANARRMAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEQNVGNLLMVWKFLITFADVLELWPFTIDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGIGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLVLSAGLGPQLKKRNITWSYAIDKDEGKSCEDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRTAFRKNPADAENILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPSSANQNSEQYDDTNICSSNGKENLGHNVDLIQNEFDTDLPCFPKNVSTDADCLSSVTPQPVACEDLNAGNLVQDNMEIDESKSGESWILGLAEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLESANALKKQMWAEAQIDKVRLKDDIIGKSDFPSVAGNKVETQYTYPAVGGNQSPMLDININNINNEASPSTAENQKGALVAQNMPMEKSSSIQDFGTGTCADIPHTQVPAQYSKRSRSQLKSYIAHMAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGKWRLIDSEEAFDALLTSLDSRGIRESHLRLMLQKIENSFKENVRKKNARCAKNGSRGEVSIKIEANETYSIPDHNAGSDSPSSTLHDLNPDISETSSSFKIELGKTECEKKSAWRRYQDFQKWLWKECYNSSVLCAMKYGIKRCKPQMDICDACLNPYFVEDSHCNSCHRTFPSNTGFNFSKHAFQCRDKLSKDNCFLEYPLPLRTRLLKVLLAFMEVSVLSEAFGTSWTDDMRKHWGVKLSKSSSVEELLQILTLFEKALRRDFLSSNFSTTDELLGLSSMSESSVQASTDPESVAVLPWVPLTTAALSLRLFEIDSSISYGKFEEHEPCEEKEAREYIKLPSRYAHTKSNREVEPAEFDHIEFTKDKSVHKKIVRSGNKRGRGTNEQGRGKKLAKRVYNSKRDGGRKNAKVTDNLSHKLKHQARGTQGQGAGRGRRTVRKRRVGKRAVEDLLLGHTTASHSSKIDREPLRNLDEEWDGEKASPMTPVHIGVVDNSNSAEEVESDDDNAQAVEYDQGNWEVGFNGVPPNRWSRDLVGMSDEDVDAFEDDNDNENGIEENELEDSEADVMSEGSDGIANRVVNVGGSDSALSEDSSD 1650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02433 1650 ProSiteProfiles HARE-type HTH domain profile. 625 694 IPR007759 GO:0006355
Cca08g02433 1650 MobiDBLite consensus disorder prediction 1592 1650 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 723 771 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 726 749 - -
Cca08g02433 1650 Pfam HB1, ASXL, restriction endonuclease HTH domain 625 693 IPR007759 GO:0006355
Cca08g02433 1650 Coils Coil 305 374 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 1595 1623 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 182 203 - -
Cca08g02433 1650 Pfam DDT domain 445 499 IPR018501 -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 289 309 - -
Cca08g02433 1650 PANTHER HOMEOBOX DOMAIN PROTEIN 130 1650 - -
Cca08g02433 1650 ProSiteProfiles DDT domain profile. 443 502 IPR018501 -
Cca08g02433 1650 Coils Coil 276 296 - -
Cca08g02433 1650 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 130 1650 IPR044977 GO:0006357
Cca08g02433 1650 MobiDBLite consensus disorder prediction 1 78 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 750 771 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 1437 1475 - -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 14 62 - -
Cca08g02433 1650 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 835 878 IPR028942 -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 162 230 - -
Cca08g02433 1650 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1016 1088 IPR028941 -
Cca08g02433 1650 SMART testlast3 443 502 IPR018501 -
Cca08g02433 1650 MobiDBLite consensus disorder prediction 1432 1496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02433 Cca-Chr8 58448182 58456488 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02433 132 1578 Homeobox Transcription Factor Family AT1G28420 46.393 0.0 1119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca08g02433 WSD 3.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02433 - - ccaj:109811517 2805.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02433 08 58448182 58456488 Cca08g02433 08 58448182 58456488 ECH