Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02429 ATGGAAAGGCAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGTTGATACGTGAGAAACAACGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGACGGGAAATGGAACGAAGGGAAAAATTATTGTTGAAAGAACATTTAAGAGCCGAGAAAAAGAGGCTAAAAGAAGAGATTCGCAAGGAGAAAGAGGAAGAGAGGAAGAAAGCTGCCCTTGAGAAGGCAAATGCTCGTAGAATGGCTAAAGAATCTATGGAGCTTATTGAGGATGAACAGTTGGAATTGATGGAGTTGGCCGCTGCAAGCAAGGGGCTTTCTTCTATTATTCATATTGATCTTGATGCTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTATTTCCACCCAAAAGTGTAAAGCTGAGAAAGCCATTTGCCATCCAACCCTGGATTAACTCAGAACAGAATGTTGGCAACCTTCTCATGGTTTGGAAATTCTTGATTACTTTTGCTGATGTCCTTGAATTATGGCCTTTTACTATTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCTCTGCTCAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGAATAGGGATGAACCAGAATGGAGCCGCTAATCCCGGAGGTGGGCATCCATTGATTGTGGAAGGAGCATATGCATGGGGCTTTGATATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCTGAAATTTTCCGGCAGTTAGTACTATCTGCAGGATTAGGACCGCAGCTGAAGAAAAGAAATATTACATGGTCCTATGCAATTGATAAAGACGAGGGAAAAAGTTGCGAAGATATCATTTCTACACTCCGTAATGGTTCAGGAGCTGAAAGTGCCGTGGCCAAAATGCAAGAGAGAGGTCTGTTAGCTCCTCGAAGATCAAGGCACAGGTTAACTCCTGGAACAGTTAAATTTGCAGCTTTTCATGTTCTCTCACTTGAGGGTAGTAAGGGTTTGACAGTACTAGAGCTTGCAGATAAAATCCAGAAATCTGGTCTTCGGGACTTGACAACCAGCAAGACACCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATATTGTGTACGGACTGCTTTCAGGAAGAATCCTTCTGATGCTGAGAACATTCTTTCAGAAGCAAGAAAGAAAATTCAAATATTTGAAAATGGGTTTCTAGCTGGtgaagatgctgatgatgttgagagagaagatgaatcagaaagtgatgaagttgacgaggatcctgaagatgatgatTTAGTAAATCCTTCAAGTGCAAACCAAAATTCTGAACAGTATGTTGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGGTCACAATGTAGATCTTATTCAAAATGAGTTTGATACGGATCTACCTTGTTTTCTTAAGAATGTTTCTACAGATGCTGATTGTCTCAGTTCTGTCACTCGACAACCTGTTGCTTGTGAAGATTTAAATGCTGGAAATCTTGTTCAAGATAATATGGAAATTGATGAAAGCAAATCAGGAGAGTCCTGGATTCTAGGGCTTGCTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTCGTGTTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTGAAAGATGATATTATTGGTAAATCAGATTTTCCATCACTTACTGGGAATAAGGTTGAAACACAATACACATATCCAGCTGTGGGGGACAACCAAAGCCCAATGCTTGACATTAATATTAACAATATTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAGGGAGCTCCTGTTTCACAGAACATGCCTATGGAGAAGTCCTCGTCAATTCAAGATCTTGGCACGGGTACTTGTGCAGACATCCCTCATACTCAGGTACCTGCACAATATTCAAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATGGCAGAGGAGATGTATGTTTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGAAATCGATATTGGCAGTTTGTTGCTTCTGCTTCCAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATATCATGATGGGAAGTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGACGTCATTGGATTCTCGCGGGATCAGGGAATCTCATTTGCGCTTGATGTTGCAAAAGATTGAGAATTCCTTTAAAGAAAATGTTCGAAAGAAGAACGCACGATGTGCCAAGAATGGAAGCAGAGGCGAAGTTTCTGTTAAAATTGAAGCTAATGAAACATATTCTATCCCTGACCACAATGCTGGATCCGACAGTCCTAGCAGTACCCTTCATGACTTGAACCCTGATATATCTGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAACTGAGTGTGAGAAGAAATCTGCCTGGAGAAGATATCAAGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCAGTTTTATGTGCAATGAGATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATGCCTGCCTCAATCCTTATTTTGTTGAAGACTCCCATTGCAATTCCTGCCACCGGACTTTTCCCTCGAATACTGGATTTAATTTTTCTAAACATGCATTTCAGTGTCGTGATAAGTTATCCAAAGATGATTGTTTTTTGGAATATTCGCTTCCCTTGCGAACAAGATTACTTAAGGTCCTGTTGGCTTTTATGGAGGTATCTGTTCTATCTGAAGCATTTGGAACAAGTTGGACTGATGATATGAGGAAGCACTGGGGTGTAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGACCCTATTTGAGAGAGCAATATGGCGAGATTTTCTGTCATCGAACTTCTCTACGACAGATGAATTGTTGGGATTAAGCAGTATGTCAGAAAGCTTTGTGCAGGCTTCAACTGATCCTGAATCTGTTGCTGTGCTTCCATGGGTTCCACTAACCACTGCAGCTTTGTCTCTCAGGCTTTTTGAGATTGATTCATCCATCAGCTACGGAAAGTTTGAGGAACATGAGCCTTGTGAGGAGAAAGAAGCAAGAGAATACATAAAGCTTCCATCGAGATATGCTCACACAAAATCTAATAGGGAGGTTGAACCAGCAGAATTTGACCATATTGAATTCACTAAAGATAAATCTGTTCATAAGAAAATTGTACGAAGTGGCAATAAACGTGGACGGGGGGCTAGTGAACAAGGTCGGGGTAAAAAGCTGGCTAAAAGAGTGTACAATTCCAAACGTGATGGTGGACGCAAGAATGCTAAGGTCACTGAGAATCTAAGTCACAAATTAAAACATCAGGCACGAAGAACACAAGGACAAGGTGCTGGGCGAGGTCGGTCTGTAAGGAAACCGAGAGTGGGAAAGAGAGCTGTTGAAGATTTGTTGCTGGGTCATACGACAGCCAGTCATAGCTCCAGGATTGATAGGGAACCGTTGAGAAACTTCGATGAGGAATGGGATGGCGAAAAGGCAAGTCCCATGACTCCTGTACACATTGGGGTTGTTGACAATAGTAACAGTGCTGAAGAGGTGGAATCTGATGACGACAATGCTCAAGCTGTGGAATATGATCAAGGAAACTGGGAAGTAGGTTTTAATGGTGTTCCCTCCAACAGATGGAGTAGGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTTTGAAGATGATAATGACAATGAGAATGGCATCGAAGAGAATGAATTGGAGGATTCAGAGGCAGATGTTATGAGTGAGGGTTCAGATGGGATAGCAAATAGGGTAGTAAATGTTGGAGGGTCAGACTCGGCTTTGTCTGAAGATTCTTCTGATTAG 4062 0.4047 MERQDRERRKEEERLIREKQREEERSKREQRREMERREKLLLKEHLRAEKKRLKEEIRKEKEEERKKAALEKANARRMAKESMELIEDEQLELMELAAASKGLSSIIHIDLDALQNLESFRDSLCVFPPKSVKLRKPFAIQPWINSEQNVGNLLMVWKFLITFADVLELWPFTIDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGIGMNQNGAANPGGGHPLIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLVLSAGLGPQLKKRNITWSYAIDKDEGKSCEDIISTLRNGSGAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRTAFRKNPSDAENILSEARKKIQIFENGFLAGEDADDVEREDESESDEVDEDPEDDDLVNPSSANQNSEQYVDTNICSSNGKENLGHNVDLIQNEFDTDLPCFLKNVSTDADCLSSVTRQPVACEDLNAGNLVQDNMEIDESKSGESWILGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLESANALKKQMWAEAQIDKVRLKDDIIGKSDFPSLTGNKVETQYTYPAVGDNQSPMLDININNINNEASPSTAENQKGAPVSQNMPMEKSSSIQDLGTGTCADIPHTQVPAQYSKRSRSQLKSYIAHMAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGKWRLIDSEEAFDALLTSLDSRGIRESHLRLMLQKIENSFKENVRKKNARCAKNGSRGEVSVKIEANETYSIPDHNAGSDSPSSTLHDLNPDISETSSSFKIELGKTECEKKSAWRRYQDFQKWLWKECYNSSVLCAMRYGIKRCKPQMDICDACLNPYFVEDSHCNSCHRTFPSNTGFNFSKHAFQCRDKLSKDDCFLEYSLPLRTRLLKVLLAFMEVSVLSEAFGTSWTDDMRKHWGVKLSKSSSVEELLQILTLFERAIWRDFLSSNFSTTDELLGLSSMSESFVQASTDPESVAVLPWVPLTTAALSLRLFEIDSSISYGKFEEHEPCEEKEAREYIKLPSRYAHTKSNREVEPAEFDHIEFTKDKSVHKKIVRSGNKRGRGASEQGRGKKLAKRVYNSKRDGGRKNAKVTENLSHKLKHQARRTQGQGAGRGRSVRKPRVGKRAVEDLLLGHTTASHSSRIDREPLRNFDEEWDGEKASPMTPVHIGVVDNSNSAEEVESDDDNAQAVEYDQGNWEVGFNGVPSNRWSRDLVGMSDEDVDAFEDDNDNENGIEENELEDSEADVMSEGSDGIANRVVNVGGSDSALSEDSSD 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02429 1353 MobiDBLite consensus disorder prediction 1135 1201 - -
Cca08g02429 1353 Coils Coil 1 78 - -
Cca08g02429 1353 Pfam HB1, ASXL, restriction endonuclease HTH domain 329 397 IPR007759 GO:0006355
Cca08g02429 1353 PANTHER HOMEOBOX DOMAIN PROTEIN 1 1353 - -
Cca08g02429 1353 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 539 582 IPR028942 -
Cca08g02429 1353 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 720 792 IPR028941 -
Cca08g02429 1353 MobiDBLite consensus disorder prediction 1141 1179 - -
Cca08g02429 1353 MobiDBLite consensus disorder prediction 1 36 - -
Cca08g02429 1353 Pfam DDT domain 149 203 IPR018501 -
Cca08g02429 1353 ProSiteProfiles DDT domain profile. 147 206 IPR018501 -
Cca08g02429 1353 MobiDBLite consensus disorder prediction 650 679 - -
Cca08g02429 1353 MobiDBLite consensus disorder prediction 428 466 - -
Cca08g02429 1353 SMART testlast3 147 206 IPR018501 -
Cca08g02429 1353 MobiDBLite consensus disorder prediction 1287 1353 - -
Cca08g02429 1353 MobiDBLite consensus disorder prediction 430 453 - -
Cca08g02429 1353 ProSiteProfiles HARE-type HTH domain profile. 329 398 IPR007759 GO:0006355
Cca08g02429 1353 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1353 IPR044977 GO:0006357
Cca08g02429 1353 MobiDBLite consensus disorder prediction 1298 1326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02429 Cca-Chr8 58418010 58428412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02429 21 1281 Homeobox Transcription Factor Family AT1G28420 49.006 0.0 1067
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca08g02429 WSD 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02429 - - ccaj:109811517 2405.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02429 08 58418010 58428412 Cca08g02429 08 58418010 58428412 ECH