Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02428 ATGGATGTTGAAGAGTTGTTTCAGGCTCAGGCCCTTTTATATAACTACACTTATAGCTTCATTGGTTCCATGTCTCTCAAAAGTGCAGTTCATTTGGGAATACCAGACGTAATCTCAAAGCATGGCCAACCAATTACTATTCCTGAGTTGGTCTTGGCACTTGAGATCAACCCTAATAAATCAGGTTATGTGTATAGGCTCATGCGCTTGTTGGTGCATGCTGGCTTCTTTGTGACAAGCAAGGTTATAAAAGAAGATAAAGAAGAAGTGGGGTATGATCTCACACCTTCCTCTAGGCTACTCCTTAAAGAAAATGTTCCAACATTGTCTCCTTTTGTTCGAGCAATGTTTCATCCGGCTCTGGTTCACTCATCAGAGTTTTTGGCTGAGTGGTTTCACAAAAATGAGACAATGGCAAGGACATTCCATGAATATCCTTTTCTTCCAAACCAGTCTGGCATTAGATCTGATGTTTTTGGACAACTGAACCTACCTCATTTACATGATCCAATTGAGGCTCCCTCCAGAACTCCTTTTCCCCTTGGAAATGAACAGCAACCCAGAATTCATGCTCCCCAAGGTCATTCTTCTCGTGTTCGTCTTTTGTCTCAACAGGAAAAGCAAGTGATTCCCTATCCATCTCCTCCTCGAGATAATGATGGAGAACCCAAAAGGGAACCTCACACAAACATAACCAATACTGGAATGAACTCTCACTTTTCTGATCACCCAATTATTGGACAAGAAAATTCTTATGCCTTACCTGGTGGCCAAGTTAACCATAACGATGCAATATTGAGGATGGAGAGGAAACGGAAGAGTGATGAAGCTAAAGTTGCTAAGGAAGTTGAAGCCTATGAAATGAGGATGCGAAAAGATCTTGAGAAGCAAGATAACCTCAGACGAAAGGTTTTATTAAAATGA 924 0.4123 MDVEELFQAQALLYNYTYSFIGSMSLKSAVHLGIPDVISKHGQPITIPELVLALEINPNKSGYVYRLMRLLVHAGFFVTSKVIKEDKEEVGYDLTPSSRLLLKENVPTLSPFVRAMFHPALVHSSEFLAEWFHKNETMARTFHEYPFLPNQSGIRSDVFGQLNLPHLHDPIEAPSRTPFPLGNEQQPRIHAPQGHSSRVRLLSQQEKQVIPYPSPPRDNDGEPKREPHTNITNTGMNSHFSDHPIIGQENSYALPGGQVNHNDAILRMERKRKSDEAKVAKEVEAYEMRMRKDLEKQDNLRRKVLLK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02428 307 PANTHER HOMEOBOX DOMAIN PROTEIN 133 303 - -
Cca08g02428 307 MobiDBLite consensus disorder prediction 189 210 - -
Cca08g02428 307 Gene3D - 1 101 IPR036388 -
Cca08g02428 307 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 133 303 IPR044977 GO:0006357
Cca08g02428 307 Coils Coil 283 303 - -
Cca08g02428 307 Pfam Dimerisation domain 24 72 IPR012967 GO:0046983
Cca08g02428 307 SUPERFAMILY "Winged helix" DNA-binding domain 4 104 IPR036390 -
Cca08g02428 307 MobiDBLite consensus disorder prediction 166 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02428 Cca-Chr8 58415651 58417900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02428 242 303 Homeobox Transcription Factor Family AT5G44180 46.774 9.93e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02428 - - ccaj:109811518 336.65