Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02423 ATGGCGCTGcttcttcctctcttcctcttcctcttcctcttGGGCCAGTCCACCACTTGGGCCCTAACCCAGGACGGCCTCTACCTCTACCGCTGGAAGCTCTCCCTGGACGACCCCGACTCCTCCCTCTCCTCCTGGAACAACGGCCACCCCACCCCATGCAACTGGGCCGGCGTCACGTGCGGCCCAACCAACAGCACGGTGAGCTCCCTGGACCTCTCGAGCTTCAACCTGGCAGGCCCATTCCTCCCCTCCCTCCTCTGCCGGCTCCCCAACCTGAGCTCCATAATCATGTACAACAACTCCATCAACGAAAGCCTCCCCCTCCAAATCTCCCTCTGCACCTCCCTCACCCACCTCGACCTCTCCCAGAACCTCCTCACAGGCCTCCTCCCCCACACCCTCCCTCTCCTCCCCAACCTCCTCCACCTCGACCTCACCGGCAACAACTTCTCCGGCCCAATCCCCCCCTCCTTCGGAACCTTCCCCAAACTCCAAGTCCTCTCCCTCGTCCTCAACCTCCTCGACCACACCCTCCCCCCCTCGCTCTTCAACGTCACCACTCTCAGAACCCTAAACCTCTCCTACAACcccttcctcccctcccccctccctccctccctcGGCAACCTCACCAACCTCCGCACGCTCTGGCTCACCGCTTGCAACCTTGTCGGCCCCATCCCGGACTCCCTCGGGAACCTCCCCGACCTTCGCTTGCTCGACCTCGCCCTCAACAACCTCCACGGGCCCATTCCCTCTTCCCTCACTCGCTTGACCAACCTCAAACAGCTTGAGCTCTACAACAACTCCCTCTCCGCCCACTTGCCTCAGGGAATGTCCAACCTCACTTCCTTGAGGCTCTTTGATGTTTCAATGAACCATTTGACTGGCCCCATTCCCGATCACTTGTGTCGTTTGCCTCTCCAGAGTCTTAACCTCTACGAGAACTCCTTCACCGGCCAGTTGCCGCCGAGTATAGCTCTCTCGCCCAACCTCTACGAACTCAGGCTGTTCGGGAACAAACTCGCCGGGGACCTGCCGGAGGATCTCGGCAAGAATGCTCCCTTGGTGTGGCTTGACGTTTCCTCCAACCGTTTCTCCGGCCAGATTCCGGCAACTGTATGCGAGAAAGGCCAGTTGGAGGAGCTTCTCATGTTGGAGAACGACTTCTCCGGGGGGATTCCGCCGAGTTTGGGCGCGTGTCGGAGCTTGACGCGTGTCAGACTGGGGAATAATCGCTTGTCCGGTGAGGTTCCGGCGGCTATGTGGGGTCTTCCGCATGTGTATTTGCTTGAGCTGGTGGGTAACTCGTTTAACGGTTCCATCGCGAGGACCATTGGCGGGGCGAGGAATTTGTCGCTGTTGATTTTGACCAACAATAGCTTCTCCGGTGTGATCCCCGACGAGGTTGGGTGGTTGGAGAATCTTCAGGAGTTTTCTGGTGGTGATAATAAGTTCAGTGGGCGGTTGCCTGGGAGTATTGTGAAACTTGCTCAGCTTGGGACTCTTGATCTTCACAGCAATCAGCTCTCCGGGGAGCTTCCCAAGGGGATTCAATCTTGGAAGAAACTTAACGACTTGAATTTGGCCAATAATGAGATGGGTGGGGAGATTCCTGATGAAATTGGGAGTTTGTCGGTGTTAAACTTTCTTGATCTTTCAAACAACCAATTTTCTGGGAATGTCCCTCTCGGGTTGCAGAATTTGAAGCTCAATCAGCTCAATTTGTCTTATAACAGGCTTTCAGGGAGACTTCCCCCTCTGCTGGCTAAGGATATGTACAGGGCTAGTTTTATGGGTAATCCTGGCTTGTGTGGAGATTTCAAAGGTTTGTGTGATGGGAAAGGGGAGGGTAAGGGTAAGGGATTTGTGTGGATTCTGAGAACTATTTTTATAGTTGCCTCTTTGGTGTTTGTCGTTGGTGTGGTCTGGTTCTACTTCAGGTACAGGAATTTCAAGAATGCTGGAAGATCTGCTGATAAATCGAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATCTTGAATTGCCTCGACGAAGATAATGTGATAGGAAGTGGGTCGTCTGGGAAGGTGTACAAGGTTGTGCTTAGCAGCGGAGAAGCCGTTGCTGTCAAGAAGATATGGGGTGGGGCCAGGAAGCAAATAGATAGTGGGGATGTGGAGAGGGGTCAGTTTCATCAGGACAGTGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAAATAAGGCACAAGAACATTGTCAAGCTGTGGTGTTGCTGCACCACTAGGGATAGCAAGCTGTTGGTTTATGAGTATATGCCAAATGGAAGTCTGGGTGATTTGCTGCATAGCAATAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAGGGCCTCTCATATTTGCATCATGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGACTTTGGTGCAAGGGTGGCAGATTTTGGCGTAGCTAAGGTAGTTGATGCCACCGGGAAAGGAACTAAATCCATGTCTGTCATAGCTGGGTCTTGTGGGTACATTGCACCAGAATATGCATACACTCTTAGAGTGAATGAGAAGAGTGACATATATAGCTTTGGTGTTGTCATACTTGAGTTGGTTACGGGAAGGCGGCCCATAGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGCGTGCACCACCTTGGATCAGAAAGGCGTGGACCATGTGCTTGACTCCAGGCTTGACTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGCCTCATGTGCACTAGTCCTCTTCCAATCAACAGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGGGCACAGAAAACCTAACAAAACCTGCCAAGAAAGATGGGAAGTTGTCCCCTTATTACTATGACGATGGGTCAGATCATGGAAGTGTTGCTTAA 2997 0.5068 MALLLPLFLFLFLLGQSTTWALTQDGLYLYRWKLSLDDPDSSLSSWNNGHPTPCNWAGVTCGPTNSTVSSLDLSSFNLAGPFLPSLLCRLPNLSSIIMYNNSINESLPLQISLCTSLTHLDLSQNLLTGLLPHTLPLLPNLLHLDLTGNNFSGPIPPSFGTFPKLQVLSLVLNLLDHTLPPSLFNVTTLRTLNLSYNPFLPSPLPPSLGNLTNLRTLWLTACNLVGPIPDSLGNLPDLRLLDLALNNLHGPIPSSLTRLTNLKQLELYNNSLSAHLPQGMSNLTSLRLFDVSMNHLTGPIPDHLCRLPLQSLNLYENSFTGQLPPSIALSPNLYELRLFGNKLAGDLPEDLGKNAPLVWLDVSSNRFSGQIPATVCEKGQLEELLMLENDFSGGIPPSLGACRSLTRVRLGNNRLSGEVPAAMWGLPHVYLLELVGNSFNGSIARTIGGARNLSLLILTNNSFSGVIPDEVGWLENLQEFSGGDNKFSGRLPGSIVKLAQLGTLDLHSNQLSGELPKGIQSWKKLNDLNLANNEMGGEIPDEIGSLSVLNFLDLSNNQFSGNVPLGLQNLKLNQLNLSYNRLSGRLPPLLAKDMYRASFMGNPGLCGDFKGLCDGKGEGKGKGFVWILRTIFIVASLVFVVGVVWFYFRYRNFKNAGRSADKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEAVAVKKIWGGARKQIDSGDVERGQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPIDPEFGEKDLVMWACTTLDQKGVDHVLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPAMRRVVKMLQEVGTENLTKPAKKDGKLSPYYYDDGSDHGSVA 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02423 998 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 980 - -
Cca08g02423 998 Gene3D Transferase(Phosphotransferase) domain 1 773 986 - -
Cca08g02423 998 PANTHER LRR RECEPTOR-LIKE KINASE 8 980 - -
Cca08g02423 998 Gene3D Ribonuclease Inhibitor 255 308 IPR032675 -
Cca08g02423 998 SUPERFAMILY RNI-like 70 392 - -
Cca08g02423 998 SMART LRR_typ_2 115 137 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 162 186 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 498 521 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 259 282 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 138 161 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 90 114 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 211 235 IPR003591 -
Cca08g02423 998 SMART LRR_typ_2 283 307 IPR003591 -
Cca08g02423 998 Pfam Protein kinase domain 686 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02423 998 SUPERFAMILY L domain-like 357 606 - -
Cca08g02423 998 Gene3D Phosphorylase Kinase; domain 1 668 772 - -
Cca08g02423 998 Gene3D Ribonuclease Inhibitor 21 199 IPR032675 -
Cca08g02423 998 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Cca08g02423 998 ProSiteProfiles Protein kinase domain profile. 684 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02423 998 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Cca08g02423 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Cca08g02423 998 SUPERFAMILY Protein kinase-like (PK-like) 679 965 IPR011009 -
Cca08g02423 998 SMART serkin_6 684 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02423 998 Gene3D Ribonuclease Inhibitor 200 254 IPR032675 -
Cca08g02423 998 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515
Cca08g02423 998 Pfam Leucine Rich Repeat 116 135 IPR001611 GO:0005515
Cca08g02423 998 Pfam Leucine Rich Repeat 140 160 IPR001611 GO:0005515
Cca08g02423 998 Gene3D Ribonuclease Inhibitor 309 615 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02423 Cca-Chr8 58363378 58366882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02423 18 998 Receptor kinase-like Gene Family AT1G28440 68.896 0.0 1386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca08g02423 Pkinase 6.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02423 - - gmx:100776936 1670.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02423 08 58363378 58366882 Cca08g02423 08 58363378 58366882 ECH