Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02420 ATGAACCACGTTGAGCACATCGCTTACGATGTGGTGATGATCACTCTATCCATATCTCTCATCGTTCTTGGAATCATCCTCTTCCTGGCTTGCAAGAAGAAGCCCGTTGAATCAGAAGAAACACTCCCCGTGAAGCTTTGTGCTGGTGCATACCCCTTGACGGAAATCGACGCCGCCACCGACGGCTTCAACCAAAGAAGAATCATTGGGCAGGGTCGCTTAGGAACAGTGTACGCAGGAAGACTAGAGAAAGAAGAACAAGTGGTAGCCGTGAAAAGGATTCACCCTTTTCTTGTGTTGAGCAATATTAATGCAGGGTTTAGTTTCTCATCCGTGTTGAAGTGGCTCTCCCTGGCTCAACACCCCAACGTGGTTCCGATCATAGGGTTCTCGGAAGCACCGGGTGAGAGGGTTATTGTGATGGAGTTGGTGCACATGGCGAGCTTGGAGTTCTACCTGCATCAGAACCCTGATGGGGCTTCGCTTTTGGATTGGAACAAGAGGTTGAGGATCGCGGCTGGAGCAGCTAGAGGGCTTCAATATTTGCATGAGGTTGTGGCGCCAAACATTGTGCATGGGTGTGTCAAGTCCTCTAATATTCTGATTGATGTAAACTTTTGTGCCAGGATTTGTGACTATGGTCTTAACTTTTTGGCACCTGCGGAGAAGAGAGGGGTGGTGGGGTATGTGGATGATGAGTATTGGAGTGAGAGAAGAAGGGGTGGTGGAGCTTCCAAGGAGAGTGATGTTTATGGGTTAGGAGTGGTGCTGTTGGAGCTTTTGAGTGGGAAAGGGTGTGAGGGAGGGGCCTTGGTCAACTGGGCATTGCCTTTGATCAGGGAAACCTCTTTTACTCAACTTTTGGATCCTAGGTTGCTCATTCCTTCTCATATTAATCCTCTTGTTAGATTAGCCAAAGTTGCTTCTGCCTGTGTTGCCAATCCCAGGAAATATGGGGTTGATAAGGAACCTATTGAAATTGACTTTACGCCACCTTTTAGAAGGATTGACATGATTGACGAATTAGAGAAGATGGCAGGCCTAAATATTCCCAAAGACTTGTTGAGTGAGGAAGCTAATCAATATTTGAAGGATGCGTGCTTGAAGTATGAGATCAAATGTCCCCCACCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCAATTTCTGGAAGAAACGTGTGTAAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTCAGTAAACGTGAAGTTTGCAATGCATATACTGAATTGAACGACCCTGTAGTACAACGACAGAGATTTGCTGAACAATTAAAGGATCGGCAGTCAGGCGATGATGAAGCCATGGCCCTGGATGAAACATTTTGTACAGCTCTGGAGTATGGTTTGCCACCTACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACAATGTTACTGACAGATTCACAGAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGA 1554 0.4607 MNHVEHIAYDVVMITLSISLIVLGIILFLACKKKPVESEETLPVKLCAGAYPLTEIDAATDGFNQRRIIGQGRLGTVYAGRLEKEEQVVAVKRIHPFLVLSNINAGFSFSSVLKWLSLAQHPNVVPIIGFSEAPGERVIVMELVHMASLEFYLHQNPDGASLLDWNKRLRIAAGAARGLQYLHEVVAPNIVHGCVKSSNILIDVNFCARICDYGLNFLAPAEKRGVVGYVDDEYWSERRRGGGASKESDVYGLGVVLLELLSGKGCEGGALVNWALPLIRETSFTQLLDPRLLIPSHINPLVRLAKVASACVANPRKYGVDKEPIEIDFTPPFRRIDMIDELEKMAGLNIPKDLLSEEANQYLKDACLKYEIKCPPPETTARLLDKLVGQFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVSKREVCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02420 517 SUPERFAMILY Protein kinase-like (PK-like) 45 306 IPR011009 -
Cca08g02420 517 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 278 515 IPR006195 -
Cca08g02420 517 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 317 - -
Cca08g02420 517 Pfam tRNA synthetases class II (D, K and N) 320 513 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca08g02420 517 Gene3D Transferase(Phosphotransferase) domain 1 45 306 - -
Cca08g02420 517 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 317 - -
Cca08g02420 517 Gene3D Bira Bifunctional Protein; Domain 2 307 517 IPR045864 -
Cca08g02420 517 ProSiteProfiles Protein kinase domain profile. 63 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02420 517 SUPERFAMILY Class II aaRS and biotin synthetases 318 514 IPR045864 -
Cca08g02420 517 Pfam Protein kinase domain 64 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02420 Cca-Chr8 58343578 58347486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02420 48 326 Receptor kinase-like Gene Family AT3G59420 37.543 2.23e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca08g02420 tRNA-synt_2 5e-33 CL0040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02420 - - gmx:100808319 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02420 08 58343578 58347486 Cca08g02420 08 58343578 58347486 ECH