Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02419 ATGACATGGTGCAATGACTCTGATGAGGAGAGGGGCTTTGAATCAATCACGCCAACTATGACTGTTACTCCTAACACTGATGATGCTCCCATAAAACTCACCGAAGAAATTCGAACCATAACATGCCCCTCGTGCGCCCATAACATTGATTTCAAAGATCAGGGTGGAATTCATGACTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGATCCGAATGACCAAGAAATACTAGAACATTTGGAGGCAAAAGTGAAGTCTGATGCATGCAAGCTTCATCCCCTTATTGATGAATTCATACCAACGCTTGAAGGGGAGAATGGGATTTGTTACACACACCCAGAAAAGCTACCAGGAGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACTGATGACGAAGGAAGCGAAACAAGATGGCACAAAACGGGCAAAACTAGAGCAGTCTTAGCTGGTGGTGCAGTAGTAAAAGGTTTTAAAAAAATACTAGTCCTCTACACCAACTATGGCAGGCAAAAGAAGCCTGAGAAGACCAATTGGGTGATGCATCAATACCATCTTGGCAGTAGTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTACCAGACACAACCAAGACAAAGTGGTGGTTCCATTATCATAAAGGATCCGTACGAAAAAATTTTGAATGATGGAAGTAGCCACGGCCACAATACAATACCTAAAACTGCATCTCTTGTGGACTGCTACAATGCTCCTTACATAAATTATGATCATGTTCATGTGAGTCATAATAATAGGGAAAACTCCCCACAACTAATTATTCCAAGCTCGGTTGTTCAAGTTGATGGGACTTATTCAATTCGCCTAGCAATGGATGCAAACAAAGCAAGATTGGAAAGTAACACTGGGAAGAGTTTCTAG 966 0.4224 MTWCNDSDEERGFESITPTMTVTPNTDDAPIKLTEEIRTITCPSCAHNIDFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVKSDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVLAGGAVVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSSEEEKDGELVVSKVFYQTQPRQSGGSIIIKDPYEKILNDGSSHGHNTIPKTASLVDCYNAPYINYDHVHVSHNNRENSPQLIIPSSVVQVDGTYSIRLAMDANKARLESNTGKSF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02419 321 ProSiteProfiles NAC domain profile. 63 223 IPR003441 GO:0003677|GO:0006355
Cca08g02419 321 Gene3D NAC domain 72 227 IPR036093 GO:0003677|GO:0006355
Cca08g02419 321 MobiDBLite consensus disorder prediction 136 156 - -
Cca08g02419 321 Pfam No apical meristem (NAM) protein 64 204 IPR003441 GO:0003677|GO:0006355
Cca08g02419 321 MobiDBLite consensus disorder prediction 142 156 - -
Cca08g02419 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 298 - -
Cca08g02419 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 298 IPR044799 GO:0003700
Cca08g02419 321 SUPERFAMILY NAC domain 58 223 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02419 Cca-Chr8 58327535 58331501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02419 1 233 NAC Transcription Factor Family AT4G28500 74.359 7.02e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g02419 NAM 8.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02419 - - gmx:100809389 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02419 08 58327535 58331501 Cca08g02419 08 58327535 58331501 ECH