Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02415 ATGGGGCTCATCGATCTGAACACCACTGAGGATGATGAAACTCCATTGtcttcttctgcttcatcctcttcttcttcttctCATCACTCGGGCATAAGCACTTCTGCTTCCACCGTCGTTCCTCCTCCTTCCGTCTGCTTGGAGCTGTTGCACGCCTGTGCGGGCCCTTTGATCTCTCTCCCCAAGAAAGGAACCGTTGTTGTCTACTTGCCACAGGGACACTTCGACCATGCTCAGGATTTTCCGGTCACTGCTTACAATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGACGAAGTGTATTGCCAAGTTTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGCTTGAGGGAAGGGGAAATTGATGCTGACGGGGAAGACGGGGATACTGAAGCTATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACGGCTTCAGACACCAGCACTCACGGTGGATTCTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCACCCCTGGATTATAGTCAACAGAGACCTTCACAGGAGCTGGTGGCAAAGGATCTTCATGGCCTGGAATGGAGGTTTCGACATATATACAGGGGCCAGCCACGGAGGCATTTGCTCACAACTGGGTGGAGTGCGTTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGACGATGGAGTACTGAGGTTAGGAATTCGTAGGGCAGCTCAGTTGAAAAGTGCTTGTTCCTTTGCAGTTCCCTCTGGTCAGCAATTGAATCCTGCAACTCTCATGGATGTTGTTAGTGCTTTATCTACAAGATGTGCATTTAGTGTTTGCTACAATCCAAGGGTCAGCTCTTCGGAATTCATCATACCCGTTCAAAAATTCTTGAAGAGCCTCGATTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCGGCAGAGCGAAGATTCACTGGATTAATTGCTGGAATTAGTGACGTTGATCCTGTTAGATGGCCCGGATCAAAATGGAAATGCCTACTGGTAAGGTGGGATGACATAGAAGCAGCTAGGCACAATAGGCTTTCCCCATGGGAAATTGAGCCATCTAGTTCTGCTTCAAGTTCCAGTAACTTGATGGCTGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAGCAAAGCTGGAATTTCCCGCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTATGGGTGTTAACACTCCCTTCGATGGTATTAATGCTCAGAGTCCTCGGATATATGAGTTAGGGAGGTGCTATCCTGGTTCAAACTGTTCTGGGATTCCTGCAATGGGAAACATCAGAATGCCACCTCCGGCATCTGATTTTTCCGGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGTCAACCATATGGAAGAGCCTTGTCGATCGAGGAGGCTCGAGCTAATGGTCGTTTTGGACTTTATGATGGTTATCAAATGCTCAACTCCAGAAATGGATGGTCTGCTGCACAGATGCATGACAATGCTCCACATCTGCATGCATCTGTTACACCTTCTCAAGTGTCATCTCCATCATCGGTGTTAATGTTCCAGCAAGCAGTTAATCCGGTTTCAAACTGTGATTATAGTAACAAACGCAATAAGGAAATGGAAGGTAGAGTCCATTACAAAGGTGGTTTATACACATCTGAAGTGAAAGGTAGAACATTTGCATCAGCTCAGGAAAGTGCAATTCCTTTTGGTATGTTTGATGTTCATAATCAGTTGGGAAGTTCACGGTCACACGAATCAGTTTCGGCACTGAGAAACAGTCAAGAGTTGGTTTCCTCATGTAAGAGTAGCTGTAGGCTGTTTGGTTTTTCACTGACTGAGGACACACATGGTACAAATAAAGCGGCTGAGTCCTCTACCATCACTTGTCCATTGAATCCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAGTTCCATTCTGGCGGTTGGAAGTAA 2115 0.4572 MGLIDLNTTEDDETPLSSSASSSSSSSHHSGISTSASTVVPPPSVCLELLHACAGPLISLPKKGTVVVYLPQGHFDHAQDFPVTAYNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGEIDADGEDGDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGVLRLGIRRAAQLKSACSFAVPSGQQLNPATLMDVVSALSTRCAFSVCYNPRVSSSEFIIPVQKFLKSLDCSYSVGMRFRMRFESEDAAERRFTGLIAGISDVDPVRWPGSKWKCLLVRWDDIEAARHNRLSPWEIEPSSSASSSSNLMAAGLKRTRIGMTSAKLEFPAPNGIGTSDFGESLRFRKVLQGQEIMGVNTPFDGINAQSPRIYELGRCYPGSNCSGIPAMGNIRMPPPASDFSGNGIGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRFGLYDGYQMLNSRNGWSAAQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVNPVSNCDYSNKRNKEMEGRVHYKGGLYTSEVKGRTFASAQESAIPFGMFDVHNQLGSSRSHESVSALRNSQELVSSCKSSCRLFGFSLTEDTHGTNKAAESSTITCPLNPGPSFTRLVEDEFHSGGWK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02415 704 PANTHER AUXIN RESPONSE FACTOR 35 699 - -
Cca08g02415 704 MobiDBLite consensus disorder prediction 1 35 - -
Cca08g02415 704 SMART B3_2 153 255 IPR003340 GO:0003677
Cca08g02415 704 Gene3D - 316 390 - -
Cca08g02415 704 CDD B3_DNA 151 253 IPR003340 GO:0003677
Cca08g02415 704 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Cca08g02415 704 Gene3D - 151 255 IPR015300 -
Cca08g02415 704 SUPERFAMILY DNA-binding pseudobarrel domain 146 259 IPR015300 -
Cca08g02415 704 Pfam Auxin response factor 280 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca08g02415 704 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Cca08g02415 704 MobiDBLite consensus disorder prediction 10 35 - -
Cca08g02415 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 699 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02415 Cca-Chr8 58279769 58286582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02415 152 509 B3 DNA Binding Superfamily AT2G33860 59.392 8.89e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca08g02415 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02415 K14486 - gmx:100789906 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02415 08 58279769 58286582 Cca08g02415 08 58279769 58286582 ECH