Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02404 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCATCTGCTTGCCACAGAAGCCCTTACACTTCAGGAACCGGTTGTGAggagagaagtcctgaaccaaagccaaggtggaatccaaaacctgaacaaattcgcattctggaggctatattcaactcTGGAATGGTGAATCCTCCGAGGGATGAGATAAGGAAGATAAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTCTTCTATTGGTTCCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACTCAAAGAACCAGAACCTTGAACCCCAACAAAACCCCACATCGGTCCCACAAATCACTGCAACCTCATCCTCATCTTCCTCCTCAGAGAAATCTTCCCCCAAAGAAATAATACCTACCAAGGTATTCACCATTGGTTTCTCTAACGTCACCGATATGGTGCCTAATTCCCCAACTACTTCTGTGAACCAGACCTATTTTCACACCCACAATGAGTCCACTATGCTTccaccaccaccaccgccaccaccaccTGCTGCTGCACCAACTGAGGCTTTTTTCTTCCCAGTGCAACATCATGGGCAGGGAATTGCACATAGTACGGTGACATCACAAGGCTTTTGCTTCTCTGAACTGTCCAACGTTGTTCAAGCACAATCACATGCTCAACATAATGTTGGTCCTTGCACTAGCCTTTTGCTCAGTGAGATAGTGAGTCATGGTGCTGCTGCATCAAAGAAGGATCTGGAACATGACAAGTCTCTGAAAATAATGCACCAGCCCTCACTGCTTAATTTCTGTGTCACTCCCACAACAATAGCTCCTACAACTTCCACTGTTGTACCTCCCATCACTACCTCCACTACTGCTGTTCTGTCCTCCATCGTTGCTCAATCTCAAGGTATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCAGTGGGACCTTTCAACGTGCGTGAAGCCTTTGGAGACGATGCTGTGCTCATCCATGCCACTGGTCAACCTGTTCTAACAAATCAATGGGGTGTCACTCTTCAATCACTCCAGCATGGTGCATGTTATTATTTGATATAG 1191 0.4291 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISSACHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNLEPQQNPTSVPQITATSSSSSSSEKSSPKEIIPTKVFTIGFSNVTDMVPNSPTTSVNQTYFHTHNESTMLPPPPPPPPPAAAPTEAFFFPVQHHGQGIAHSTVTSQGFCFSELSNVVQAQSHAQHNVGPCTSLLLSEIVSHGAAASKKDLEHDKSLKIMHQPSLLNFCVTPTTIAPTTSTVVPPITTSTTAVLSSIVAQSQGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLQSLQHGACYYLI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02404 396 MobiDBLite consensus disorder prediction 115 156 - -
Cca08g02404 396 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Cca08g02404 396 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 - -
Cca08g02404 396 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 IPR044557 GO:0003700|GO:0050793
Cca08g02404 396 MobiDBLite consensus disorder prediction 41 61 - -
Cca08g02404 396 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Cca08g02404 396 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Cca08g02404 396 MobiDBLite consensus disorder prediction 123 156 - -
Cca08g02404 396 CDD homeodomain 54 116 IPR001356 GO:0003677
Cca08g02404 396 Gene3D - 55 121 - -
Cca08g02404 396 SMART HOX_1 53 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02404 Cca-Chr8 58172480 58175711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02404 1 396 Wox Gene Family AT2G33880 48.131 3.64e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca08g02404 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02404 - - cam:101490093 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02404 08 58172480 58175711 Cca08g02404 08 58172480 58175711 ECH