Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02402 ATGGGAAGCAAGAAGAAGTACGAGGAAGAATCAGGCGTGGTGGTGTTATCCCATTCCCAACCCCAATTCCAATCAGAGGCACTACCCTTCAACGAGAACGACCCACAGGACATGGTAATATACCAAGTCCTCAACGAGGCCAATGCCCTCGCTCTCACCAACATCATCCACCAACCTCAACTGGGCCTCCAGCCCACCAGGCCCATAGCCAAAAAACACTACCGAGGAGTCAGGCGCCGCCCCTGGGGCAAATACGCCGCCGAGATTCGCGACTCCGCCCGCCACGGCGCCCGAATATGGCTCGGCACCTTCCAAACCGCCGAAGAAGCCGCCATGGCTTACGACCGCGCCGCTTTCAAGATGAGAGGCTCCAAGGCTCTCCTCAATTTCCCCGCTGAAATTCTCGCTCCTTCTCAATCCACTGCTGCAACCTCTTCCTCCTCTAAGATAGTGGCCTATACATTAACAGCGATGCAACAATGTCAAGTGGATCTCCTTTTCTGA 504 0.5516 MGSKKKYEEESGVVVLSHSQPQFQSEALPFNENDPQDMVIYQVLNEANALALTNIIHQPQLGLQPTRPIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEILAPSQSTAATSSSSKIVAYTLTAMQQCQVDLLF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02402 167 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Cca08g02402 167 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Cca08g02402 167 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Cca08g02402 167 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Cca08g02402 167 PANTHER DNA-BINDING DOMAIN 20 145 IPR044808 GO:0003700|GO:0009873
Cca08g02402 167 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 20 145 - -
Cca08g02402 167 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Cca08g02402 167 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Cca08g02402 167 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Cca08g02402 167 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02402 Cca-Chr8 58141028 58141769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02402 27 134 AP2-EREBP Transcription Factor Family AT5G47220 48.092 7.64e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g02402 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02402 K13433 - gmx:100811533 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02402 08 58141028 58141769 Cca08g02402 08 58141028 58141769 ECH