Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02401 ATGGATATTCATAGTAACCATGGTGCAACTTCTGAAGGGATTCTTGAGAATGTGTGGGCCAAAATCATGAGCAGTGATAGAAAAGATGGTAGAAAAGGTGATGCAGCAGAATCTTCAAACTCTTGGGAAGAATTGCCTAGTCTTGATGGAAGAGAAAGAGAAGGGTCCATGGAAATTCTACAAAGGCTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTGGATGGTATTATTCCACCTAAGGCAAGCAATAGAGAAGATTCTAGCAATAACGATTTGGAAATTGGAAGAAGTGCTACTAATCAATCTAATAAGGTGGAAGAAGATGGTGTCATGAGAAGAGATAAGAGAATTGCAAAACACTACAGGGGAGTTAGGAGAAGGCCATGGGGTAAATATGCTGCTGAGATTAGAGACTCATCCAACAAAGGTGCTAGGGTTTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTTTAGCTTATGACAAAGCTGCTTTGAGGATTAGGGGTCCCAAGGCATACCTTAATTTCCCACTTGAGATGGTTGCGAGTGCTTTAGGATCATGTGACCACCACAAAGGAAATGGTCTTACATGCACATGCATAGGGAACAAAGAAAAAACTATCAAGAAGAGAGGATCAAGGGAAAGGGAAGCATTTAATGATATCATGAATGAACAATCTGCAACAAAAAAGGTGGCAGGCTTGGAATGCATGGTAGAAAAAGAACTAGGTGTTTTTGTGTTTCAGGACTTGGGAAGTGATTACTTGGACAGTTTGTTGTCTTCTTTTTGA 819 0.409 MDIHSNHGATSEGILENVWAKIMSSDRKDGRKGDAAESSNSWEELPSLDGREREGSMEILQRLPSLGRWISMGADFWEEVLDGIIPPKASNREDSSNNDLEIGRSATNQSNKVEEDGVMRRDKRIAKHYRGVRRRPWGKYAAEIRDSSNKGARVWLGTFDTAEEAALAYDKAALRIRGPKAYLNFPLEMVASALGSCDHHKGNGLTCTCIGNKEKTIKKRGSREREAFNDIMNEQSATKKVAGLECMVEKELGVFVFQDLGSDYLDSLLSSF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02401 272 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Cca08g02401 272 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Cca08g02401 272 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Cca08g02401 272 MobiDBLite consensus disorder prediction 87 119 - -
Cca08g02401 272 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Cca08g02401 272 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 272 - -
Cca08g02401 272 SUPERFAMILY DNA-binding domain 128 188 IPR016177 GO:0003677
Cca08g02401 272 MobiDBLite consensus disorder prediction 26 50 - -
Cca08g02401 272 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
Cca08g02401 272 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Cca08g02401 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 272 - -
Cca08g02401 272 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02401 Cca-Chr8 58135511 58136366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02401 14 272 AP2-EREBP Transcription Factor Family AT4G18450 35.806 3.25e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g02401 AP2 3.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02401 - - gmx:100820226 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02401 08 58135511 58136366 Cca08g02401 08 58135511 58136366 ECH