Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02397 ATGAAAGCCAATATGAATTTTCATGGCCAAACTTCCAAAGCACTTTCAAATTTTTTGCTTTGGCCTTCTCTAATCTCTCTTCTCCTATTCCAGTGCCTTATAGCAGCTCAGGTTGTCTACAGTTTCCAAAATACAAGTGTTGGCGTGGTCATTGATGTCAATTCAGAGACGGGAAAACAACAAATAAGAGCCATGCAAATTGCAGTTCAAAGTTTCAATAATTATTCAAAGAATCATAACAACATAAAACTTTTCTTCCACAACTCTGGTGGAAACCCATTACAAGCGGCTTCAGCTGCTGAAGAACTAATCGATAAGAAGAAAGTTAAAGTGATTGTTGGCATGGGAACATGGCAAGAAGCAGCTCTAGTTGCTGACCTCGGAAACAAAGCTCAAATACCAATTATTTCATTTTCTTCTCCCCTAGTAATCCATCCTTTAATGCAACATCGTTGGCCTTTCTTGATTCAAATGGCTAAAAATCAGTCTGCACAGATGAACTGCATAGCAGATATTATCCACGTGTACAACTGGCAGAAGGTTATCGTTATATATGAAGACAACCCTTATAGTAGTGATTCTGGAATGTTAGGCCTCTTTTCTGAGGCTCTCCAAAAGGGTAACGCGCAGATTGAGAGCCGATTAGTTCTTCCGCCATTCACTTCTTTATCTGATCCAAAAGGGTTTGTTCTTGATGAATTGATCAAGTTGTTGCCACTAAATTTTCGTGTTTTTGTTGTACTTCAAGCATCATATCCTATGGTAACCCATTTGTTCAGAGAAGCTAACAAAATTGGATTGTTGGGGAAAGATTCAGCTTGGATAATCAATGAAGGGGTCACAAATATGTTGGATTTGGCTAATAAATCCGTTTTATCCTCTATGGAAGGTACTTTGGGAATCAAAACCTACTATTCTACAAATTCTCTTGCTTATACTCAGTTGGAGGAAAATTTCCAACATGGGCAAACTGAAACAGCAGGCTCTAAACCAGGATCAGATGCATTACAGGCTTATGATAGCGTTACAATCATCGCAAAGGCCTTGGAGAAAATGAATAGCAACTCTAGTAACTCAAGGGTATTCTTAGAGAAAATGTTATCTAGCAATTTCAATGGCTTAAGTGGTAATATAAGATTCAGAGACAGTCATTTATCCAACACTCCAGTATTGAGAGTCATAAACTTAGTTAATAAGGAATACAAGGAATTGGACTTTTGGACCCCAGAGTTGAAGTTTGCTGCATCTCTTAAAATATTGAAAGATAAAAAGACAAGAGGTGATTATACTACAACTAATTTAACTGGCCCAGTTGTTTGGCCAGGAGGCCTTATTTCTGCTTATCCCAAGGGATGGAAAATGCCTACCGATGCAGAACCTTTAAAAGTGGCAATTCCTATAAACCCTGCTTTTGATAATTTTTTGAAGGTAGACTCCCAAAAGCAATATGTTGGTTTCTGTATTGATCTTTTCCATGAAGTACGGAACATTCTCAGAGACAGATATTCTGGGATGCCTTATGAATTTTACCCCTTCAATGAATCCTATGAACAACTTCTACTGAATGTCATAAACAAGTCCCATGATGCTATTGTAGGAGACGTAACAATACTTGCCAACCGATCAAAGGATGTGTTGTTCACTCAGCCATACACTGAGTCAGGCTTATCAGTTATATTTCCAAAAGAGACTGAAGGGTCAGCATGGTTGTTTATGAAACCATTTAGCTGGGAAATGTGGATGGCAACTGTTGGCATCCTCATCTACACAATGTTCATCGTATGGTTCCTGGAGCATCGCTTCAATCCAGATTTTGGTGGACCACTGAAAAATCAGATCAGCACCACAGTATGGTTTGCCTTTACTTCTCTATTTTTTGCTCATAGGGAGAAAATAAGCAGCAACTCTGCACGATTAGTAGTTGGAGTATGGCTATTTCTTGTGTTTGTTCTAACTTCGAGCTACACTGCCAACCTTTCGTCGATGCTTACAGTCAAACGAATGAAGTCTGGGAGAGATATTGAGTGGTTAAAGCAAAACAACTTATCAGTTGGTTGTGAAGACAGCAGTTCCTTTGTAAAGAACTACATGATGAATGTGTATGATTTCCATCCGCAGCAAATAGTAGTGGTTAATGGAGAACATGACATCGTGGAAAAATTCAAAAGCAAAACAATTTCGGCTCTCTTTCTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAGTACTGCAAGGATTACACTGCAATTACAGCTGCCTACAGATTTGGAGGATTAGGCTTTGTATTTCAAAAAGGATCTCCCATGGCAAAAGACTTTTCTGAAGCCATTTTAACACTAGCAGAAAATGGAACACTAAAACATTTGGAAGAGTACTGGTTGACCCCTTCCACGGAATGCTCAAACAGCTCAACGACTCCAGAAACTGAGAGCCTGACCCTCAACAACTTTTGGGGTCTCTATATCATATGTGCTGCCATATCCACCATTTGCTTTGTGCGGGCCTTATTGATATATTACCTACTTAACCATAAGCATTACCATCACGAAGAGGAAGTTCAACTTCAAGGCAATGTAACCGCTGATCATGATGATAGTGTTTGGAACAAGGCAATTAGAATTGGTACAGGCTTTTACAATAATGCATACAACAAAACTTATGGTAGAGCTGCAACTTTTGGTGGAAGAGGAACACAGGTTATACGTCGTGGGAATTCCTCAAGATGGGAGAGTATAAACATTTTTGATGATGTGAGCAATCCACATCATCGTTCCCTTTCAGCTGTCACACATATCTTGTAG 2802 0.3911 MKANMNFHGQTSKALSNFLLWPSLISLLLFQCLIAAQVVYSFQNTSVGVVIDVNSETGKQQIRAMQIAVQSFNNYSKNHNNIKLFFHNSGGNPLQAASAAEELIDKKKVKVIVGMGTWQEAALVADLGNKAQIPIISFSSPLVIHPLMQHRWPFLIQMAKNQSAQMNCIADIIHVYNWQKVIVIYEDNPYSSDSGMLGLFSEALQKGNAQIESRLVLPPFTSLSDPKGFVLDELIKLLPLNFRVFVVLQASYPMVTHLFREANKIGLLGKDSAWIINEGVTNMLDLANKSVLSSMEGTLGIKTYYSTNSLAYTQLEENFQHGQTETAGSKPGSDALQAYDSVTIIAKALEKMNSNSSNSRVFLEKMLSSNFNGLSGNIRFRDSHLSNTPVLRVINLVNKEYKELDFWTPELKFAASLKILKDKKTRGDYTTTNLTGPVVWPGGLISAYPKGWKMPTDAEPLKVAIPINPAFDNFLKVDSQKQYVGFCIDLFHEVRNILRDRYSGMPYEFYPFNESYEQLLLNVINKSHDAIVGDVTILANRSKDVLFTQPYTESGLSVIFPKETEGSAWLFMKPFSWEMWMATVGILIYTMFIVWFLEHRFNPDFGGPLKNQISTTVWFAFTSLFFAHREKISSNSARLVVGVWLFLVFVLTSSYTANLSSMLTVKRMKSGRDIEWLKQNNLSVGCEDSSSFVKNYMMNVYDFHPQQIVVVNGEHDIVEKFKSKTISALFLESPYEKVFLNKYCKDYTAITAAYRFGGLGFVFQKGSPMAKDFSEAILTLAENGTLKHLEEYWLTPSTECSNSSTTPETESLTLNNFWGLYIICAAISTICFVRALLIYYLLNHKHYHHEEEVQLQGNVTADHDDSVWNKAIRIGTGFYNNAYNKTYGRAATFGGRGTQVIRRGNSSRWESINIFDDVSNPHHRSLSAVTHIL 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02397 933 Gene3D - 737 802 - -
Cca08g02397 933 Gene3D - 456 568 - -
Cca08g02397 933 Pfam Bacterial extracellular solute-binding proteins, family 3 476 795 IPR001638 -
Cca08g02397 933 Gene3D - 163 340 - -
Cca08g02397 933 SUPERFAMILY Periplasmic binding protein-like II 442 795 - -
Cca08g02397 933 Pfam Ligand-gated ion channel 796 825 IPR001320 GO:0015276|GO:0016020
Cca08g02397 933 Gene3D - 569 705 - -
Cca08g02397 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 923 - -
Cca08g02397 933 Pfam Receptor family ligand binding region 63 397 IPR001828 -
Cca08g02397 933 PIRSF IGluLR_plant 13 872 IPR017103 -
Cca08g02397 933 PANTHER GLUTAMATE RECEPTOR 16 923 - -
Cca08g02397 933 SMART GluR_14 462 796 IPR001320 GO:0015276|GO:0016020
Cca08g02397 933 CDD PBP1_GABAb_receptor_plant 46 417 IPR044440 -
Cca08g02397 933 SUPERFAMILY Periplasmic binding protein-like I 47 452 IPR028082 -
Cca08g02397 933 Gene3D - 43 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02397 Cca-Chr8 58067379 58071978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02397 47 846 Ion Channels AT2G29120 33.373 1.89e-133 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02397 - - gmx:100818078 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02397 08 58067379 58071978 Cca08g02397 08 58067379 58071978 ECH