Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02394 ATGGGGTCTGATGACAAACATGGTGAGAGGCCACTTGGTATAGGCCTTAAGGTGATGCTAGCAGCAGCCTTCTCTCTATTTGGTATGATCTTATTAATCATCATCTTCCATTTTAGTGTAAAGTATTTCATTAGACGCCAACAAAGGAGACGCCAAAACGACCTCGTTTATCAGATCAGCACTCAAATAGCACCAATTGATGTGAGTTCTGTGGAGCCATGCAACTCTGGCCTTGATGCTTCAATCATAGTCTCTCTGCCTAAGCTCTTGTATAAACAAACCGACCAATTCAAGCAAGGTGAACTTGTAGAGTGTTCCGTTTGCTTAGGCACCATTGTGGAAGATGCAATTACTAGGGTGTTACCAAATTGTAAGCACATCTTTCATGTTGAATGTGTTGATAAATGGTTCAGCTCTAACACCACATGCCCAATTTGTCGCACTGTGGTCGAACCAAGATTGCACCAAGTCCAACCCACAGCACCACTGGTTGAGGGTGGTGATGATGTTATTGAATTGGAGAAAGTGGGTTGTTCAGGTTTGAGAATAGGATCATTTCATAGGATGCTTAGTAACAGAGAAAGATCAGGGAGAAGAACTCAGAGCTGTGATGAGTCTACCATCGATGATATACAAAATGAACTAAATTAA 651 0.4194 MGSDDKHGERPLGIGLKVMLAAAFSLFGMILLIIIFHFSVKYFIRRQQRRRQNDLVYQISTQIAPIDVSSVEPCNSGLDASIIVSLPKLLYKQTDQFKQGELVECSVCLGTIVEDAITRVLPNCKHIFHVECVDKWFSSNTTCPICRTVVEPRLHQVQPTAPLVEGGDDVIELEKVGCSGLRIGSFHRMLSNRERSGRRTQSCDESTIDDIQNELN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02394 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Cca08g02394 216 SUPERFAMILY RING/U-box 89 154 - -
Cca08g02394 216 MobiDBLite consensus disorder prediction 192 216 - -
Cca08g02394 216 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 209 - -
Cca08g02394 216 PANTHER RING FINGER DOMAIN-CONTAINING 1 209 - -
Cca08g02394 216 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Cca08g02394 216 SMART ring_2 105 146 IPR001841 -
Cca08g02394 216 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02394 Cca-Chr8 58020882 58021827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02394 14 212 C3H Transcription Factor Family AT2G42360 32.273 1.52e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02394 K19038 - gmx:100786701 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02394 08 58020882 58021827 Cca08g02394 08 58020882 58021827 ECH