LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g02388	ATGGAAAGGATCAAAATCTCACACCGCACTCTCATCTTCCCTTCTCACCCACCCTTCACCCACGACCACCCTCTCCCTCTCTCCCACCTCGACACCGACCCCAATCTCCACCTCACCTTCCGCTACCTCCGCGCCTACGTCTCAACCGCCGCAACAACCTCCCTCGACCCCTTCCACGTCATCGCCGCCGCCCTCGCCCGCGCCCTCCCCCACTTCTACCCCCTCGCCGGAACCCTCCGCCACCGCCAACACCACCCCCGCCGCCTCGAGCTCTGGTGCGCCGCCGCCCAGGGCGTCCCCCTCGTCCGCGCCGCCGCCGACTTCACCCTCGACTCCGTGCACCACCTCGACGACCCGGCCTCCCCCTTCGCGGAGCACCTGGCGCCCGACCCGGGACCCGAGGAGGCCATGGAGCACCCGTGCGCGCTCCAGGTGACGGTGTTCGCGTGCGGCGGGTTCACCCTGGGCGCCGCCATGCACCACGCGCTCTGCGACGGCATGGGCGGGACCATCTTCTTCAATGCGGTGGCGGAGCTGGCGCGCGGCGCCGCCCGGATAACGGCGGAGGCCGTTTGGGAGCGGTCAAGGTTGTTGGGCCCCAGGGAAGCGGCCCGGGTTGATTCGGCGCTGGTTGGAGAGTTTCTGCGTTTGGAGAAAGGGGCTTTGCCGTATCAACAAGACGTTGGCAATGTGGCGAGAGAGTCCTTTCACGTGAGGAATGAGTGGTTGGACAACTTCAAGAGCTCCTTGTTCCAGAACTCTGGCTCTAACTTCACTGTTTTTGAGGCTCTTGGTGCCTACATTTGGAGGGCCAAGGTCCTGGCCTCTGGAGTGGAGGGTCATGAGAAGGTTAAGTTTGCTTACTCAATTAACATACGGAGACTGGTAAAGCCATCACTGCCTGCTGGCTATTGGGGCAACGGTTGTGTGCCAATGTATGTTGAGCTTAGTGCCAAAGATTTGATAGAGAAACCCATTTGGGAAACTGCAGAGTTGATAAAAAAGAGCAAAAGTAATGTGAGTGATGAGTACGTTCGGTCCTACATCGATTACCAGGAGCTGCATTTTGGGGATGGGATCACAGCGGGAAGAGAGGTGAGTGGGTTCACTGATTGGAGGCACTTGGGCCATTCCACTGTGGACTTTGGGTGGGGAGGCCCAGTTACTGTTTTACCCCTCGGAAGGAACCTACTTGGGAGTCTCGAGCCTTGCTTCTTTTTGCCTTATTCTACAGCCACTCCAGGGAAGAGGGAGGGCTTCCAGGTTTTGGTCAATTTGAGAGAGCCTGCCTTGCCTGCTTTCAGACAACACATGAAACTCTTCTCCCAATAA	1332	0.5916	MERIKISHRTLIFPSHPPFTHDHPLPLSHLDTDPNLHLTFRYLRAYVSTAATTSLDPFHVIAAALARALPHFYPLAGTLRHRQHHPRRLELWCAAAQGVPLVRAAADFTLDSVHHLDDPASPFAEHLAPDPGPEEAMEHPCALQVTVFACGGFTLGAAMHHALCDGMGGTIFFNAVAELARGAARITAEAVWERSRLLGPREAARVDSALVGEFLRLEKGALPYQQDVGNVARESFHVRNEWLDNFKSSLFQNSGSNFTVFEALGAYIWRAKVLASGVEGHEKVKFAYSINIRRLVKPSLPAGYWGNGCVPMYVELSAKDLIEKPIWETAELIKKSKSNVSDEYVRSYIDYQELHFGDGITAGREVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSLEPCFFLPYSTATPGKREGFQVLVNLREPALPAFRQHMKLFSQ	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g02388	443	PANTHER	ACYL TRANSFERASE 4	3	441	-	-
	Cca08g02388	443	Gene3D	-	2	209	IPR023213	-
	Cca08g02388	443	Gene3D	-	223	439	IPR023213	-
	Cca08g02388	443	PANTHER	N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE, PUTATIVE-RELATED	3	441	-	-
	Cca08g02388	443	Pfam	Transferase family	4	439	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g02388	3	443	Monolignol Biosynthesis Gene Families	AT5G48930	27.473	2.47e-30	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g02388	-		-	gmx:100817021	746.503

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca08g02388	08	57970578	57972427	Cca08g02388	08	57970578	57972427	ECH