Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02386 ATGGCTTACAAGCTCTGCGACTCTTGCAAATCCACCACCGCCACCTTGTATTGTCGCCCCGACGCCGCAGAGGACTCCAAGGTCCACGTCGCTAACAAGCTTGCCTTGTGTCACCCGCGTGTCACGCTCTGCGAGGTCTGTGAGCAGGCTCTGGCGCACATCACCTGCAAGGCTGACGCCGTCGCGCTATGCCTCACCTGCGACCGCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCCTCCCGGTCACTCCATTCTTCAAGTCCATACACTCTATCAAGGCTTCCTCGCCGATTAACTTCCTCGACGAGCATCGCTTTCCATCACCCAATTTTTCTTCTACGCAATATGTAGCGTTTTTTGCTGTATCGATAATGGACACCACGTTGGTTGCACTTAATGAGTCATTTCTGAATCAATCTAGGAGCTCTTCTAAAGGCAACTGGGTTTCCCAGCATAATGCTGGGGTTATGGCGGATCTTGATTTCTTCATTAGGGATGACGCACTTTCCAAGTCTCGATCTAGCAGTACTTACAATCTCAGCTACCCGATTCGGCATGGTCAGGTTGAGAATTGGGATGCCATGGAGCACTTGAGAGGGATGAATTGCATATAG 627 0.5279 MAYKLCDSCKSTTATLYCRPDAAEDSKVHVANKLALCHPRVTLCEVCEQALAHITCKADAVALCLTCDRDIHSANPLASRHERLPVTPFFKSIHSIKASSPINFLDEHRFPSPNFSSTQYVAFFAVSIMDTTLVALNESFLNQSRSSSKGNWVSQHNAGVMADLDFFIRDDALSKSRSSSTYNLSYPIRHGQVENWDAMEHLRGMNCI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02386 208 ProSiteProfiles Zinc finger B-box type profile. 39 86 IPR000315 GO:0008270
Cca08g02386 208 Gene3D - 117 203 - -
Cca08g02386 208 SMART bboxneu5 44 86 IPR000315 GO:0008270
Cca08g02386 208 SMART bboxneu5 1 43 IPR000315 GO:0008270
Cca08g02386 208 CDD Bbox1_BBX-like 43 86 - -
Cca08g02386 208 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 3 143 - -
Cca08g02386 208 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 143 IPR045281 GO:0009909
Cca08g02386 208 Pfam B-box zinc finger 41 86 IPR000315 GO:0008270
Cca08g02386 208 SUPERFAMILY Actin-like ATPase domain 159 202 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02386 Cca-Chr8 57961294 57962061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02386 1 110 C2C2-CO-like Transcription Factor Family AT5G24930 68.644 1.75e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca08g02386 zf-B_box 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02386 - - ccaj:109790340 275.789