Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02375 ATGGTCAGGCGTCCCAAAGGCCACACTTCTGGCTCCAAAAACAAATTCAAACCGCCGCTCGTTATAACCTGGGAGCCTGAGCCCGCTATAACCCCTTTTATTTTAGAAATTTTGGGTGAGAGCGACGTGGTCGAGGCCCTGGCCCGGTTCAGCCGCAGAAAGAACACGGGCCTATGCGTCCTCTCTAGTTCGGGAACTGTCGCCAACGTCACTCTCCGTCAACCCTCCGTCAACCCTCCGTCACCCTGGCGCCACCATCACTTTCCACGGTTAGGACGGCGGCTAGGTTCTCTTAGGGTTTACATCGCTAAGGGTTCTCCGGCTGCTATCCTCTTGCTGGAACATTTTGGCGCCCACCGTGGGGCCTCGGGAAAACTCTTCCCACGACCATTACAACTTCAACCCACGACCACGTGGTTAAAAGCCAATTCTGCCATTAGACGTCGGACACGTAAGAGGTTAGGACGGCGGCTAGGTTCTCTTAGGGTTTACATCGCTAAGGGTTCTCCGGCTGCTATCCTCTTGCTGGAACAGACCGGACTCTATGTAAGCGTTAATCTGGTAGATGAGGTTGTGCACGAGGAAGACACAACTTGA 597 0.541 MVRRPKGHTSGSKNKFKPPLVITWEPEPAITPFILEILGESDVVEALARFSRRKNTGLCVLSSSGTVANVTLRQPSVNPPSPWRHHHFPRLGRRLGSLRVYIAKGSPAAILLLEHFGAHRGASGKLFPRPLQLQPTTTWLKANSAIRRRTRKRLGRRLGSLRVYIAKGSPAAILLLEQTGLYVSVNLVDEVVHEEDTT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02375 198 CDD DUF296 31 82 IPR005175 -
Cca08g02375 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 78 IPR014476 GO:0003680
Cca08g02375 198 SUPERFAMILY AF0104/ALDC/Ptd012-like 28 87 - -
Cca08g02375 198 Pfam Plants and Prokaryotes Conserved (PCC) domain 32 71 IPR005175 -
Cca08g02375 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 2 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02375 Cca-Chr8 57739897 57745405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02375 1 76 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 60.526 1.32e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02375 - - gmx:100811053 125.561