Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02371 ATGTCAACTCCAACATCATCATCATCTTCTTCTATTTGGGTGTTGTCTAACATAAAGCTTCAGTTCTTTGCCCGTATCAGACGGTTTCTCCAATCCAAAGCAACCAGAAAGCGATGTGAACCCTCTGATCGATTTGACACCGCAAAGAACAAAACTGAACCCGACAACAAAGTAGAAAATTTTGAAACAGTTCAAGTTACggagaagcataaggagaaggaggaggaggaggaggaggaagagTCTGTGATCATGATGCAGAGAACTGTGAAGATGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTTGCAGTAAAGGAGATTGAAAAGTTAGCCAAGGAAGATGTTAAGGTTAGAAAGTTGATAACAGAACTTGGGGTAGTGCCGGTGCTGGTGTCTATGGCGGTGTCGCCGGTGAATAGCCGCCGGCAAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATACTGTCCAAGCTGCCTAATACAATTGACCTTGTAGATGAATCAACAACAAGTAAATTGGCAGAATTGCTTTTGTCATTGTCATCTCTAGCAAACACTCAATTCCCTCTTGCTTCATTGGACTTTCTCCCATTACTTAGAAACATTCTTGAGACAGGCTCAAGAAGTTTTGACACCAAACAATGTTGTTTAGGTGCCTTATATAACCTATCAACTGTGTTAGAGAATGCAGGTCCTTTGGTTTCAAGTGGGGTGGTCCCTTTCCTCTTGGAAGTTTCCTCAGTGAAAGAAGTTTCTGAGAAAGCCCTTGCCACTCTAGGGAACTTGTCAGTGACTTTGATGGGAAAGAAAGCAATGGAGAACAGCTCAATGGTGCCAGAAAGATTTATTGAGATCTTGTCATGGGAAGATAAACCTAAATGCCAAGAGTTGTCAGTGTATATTTTGATGATTCTAGCACATCAAAGTTCACTGCAAAGAAAGAAAATGGCAGAGGCAGGGATTGTTCATGTGCTTCTTGAAGTGGTTCTGTTGGGGAGTCCTTTGGCTCAGAAGAGAGCAATGAAACTTTTGCAATGGTTTAAGGATGAGAGACAAACAAGGGTGGGGCCACATTCTGGTCCACAAACACCGAGATTTGCAATGGGGTCACCGGTGAATCAAATAGAAGCAAAAGAAGGGAAGAAATTGATGAAGAGTTTGGTGAAACAAAGTTTGCATAGGAATATGGAAATAATAACGCAGAGGGCAAATGCAGCAGGGGAGTCTTCAAAATTGAAATCTTTGATTATTAGCACAAGTTCCAAGAGCTTACCTTACTAA 1326 0.4095 MSTPTSSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRCEPSDRFDTAKNKTEPDNKVENFETVQVTEKHKEKEEEEEEEESVIMMQRTVKMLHFGSWEEKEVAVKEIEKLAKEDVKVRKLITELGVVPVLVSMAVSPVNSRRQAGLTALIHLADGTYTNKALIVEAGILSKLPNTIDLVDESTTSKLAELLLSLSSLANTQFPLASLDFLPLLRNILETGSRSFDTKQCCLGALYNLSTVLENAGPLVSSGVVPFLLEVSSVKEVSEKALATLGNLSVTLMGKKAMENSSMVPERFIEILSWEDKPKCQELSVYILMILAHQSSLQRKKMAEAGIVHVLLEVVLLGSPLAQKRAMKLLQWFKDERQTRVGPHSGPQTPRFAMGSPVNQIEAKEGKKLMKSLVKQSLHRNMEIITQRANAAGESSKLKSLIISTSSKSLPY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02371 441 SUPERFAMILY ARM repeat 90 361 IPR016024 -
Cca08g02371 441 Gene3D - 62 420 IPR011989 -
Cca08g02371 441 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 75 441 - -
Cca08g02371 441 SMART arm_5 241 279 IPR000225 GO:0005515
Cca08g02371 441 SMART arm_5 115 155 IPR000225 GO:0005515
Cca08g02371 441 SMART arm_5 157 197 IPR000225 GO:0005515
Cca08g02371 441 SMART arm_5 198 240 IPR000225 GO:0005515
Cca08g02371 441 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 75 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02371 Cca-Chr8 57651139 57654718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02371 99 379 U-box Gene Family AT1G67530 30.241 2.94e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02371 - - gmx:100819002 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02371 08 57651139 57654718 Cca08g02371 08 57651139 57654718 ECH