Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02356 ATGTCAGAAGGGTATGAGATTCACAACAATGAAGAAACTTCATCTGGATGTTCTCAGAAATGCTCTTCCTTTGACTTGAATGAAGAATTAGCTTTCAGTGAAGATAATAACAGTGATACAGAAGAGGGGTATGAGGTCACAACTAAGGAGAATGAGAAAGAAAAGGATGAGGGCACTTCAGGAAATGGAAGTAGTACATCAAGAGAAGGAAGTGAGAGAAGAGGAACGGTGAGACAATATGTTAGATCAAAGATGCCACGGCTTCGGTGGACTCCTGAGCTTCATCATTCATTTGTGCATGCTGTTGAAAGACTTGGTGGCCAAGAGAGAGCAACACCTAAGTTGGTGCTTCAACTAATGAATGTGCGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTACAGGTCGATCCAAGAAGCAGGTCGTAGATCTCTGATACTCCACCAGTCGTCCATGAGTCCTCATCAGCATTTTAAAATGGGGAATGGTGGAATTATTCTAGCAACTAATTTCAACAAACATACTCCTTTCCAAAGTCTCCTCCAGCCCTCTTTTTCCCTTTCACGTTCACATACAAACGACACTGCTTCAAGGCACCAGCACTGGTATGTTAATCATCAAGCTTCTAGAATCCCAATGGCTTCCAGCCAAATTCAAGCAAAGGATACACGCGGCAGAATTGCACCCATGAGACCTAGCCAATTGCTTGAAGAGAAAAGGTGGCCTCCTTTAGAAATTATGAACAATCATCAAACCAAGTTCAAAAGGTTATTACCCTCCAATCCCATTGTTGCTCCTAAAAATGGGTCACAAGCTGTTCAGCCTGCTGAATGGAGTTCTGTGAACAACACAAGCATCAGAGAATATCTATCCAACAACTCCAATGAACCTCGCAACTACTCCAACAGTTTAAAGCTAGAATTTGATCCCCCATTTCGGATTAAGTTGAATCAAGAGAAATTGCAGAAAGACAAGCTACTTTTGCCTGATTTGCAACTGGGTTTGAGTCACACAGTTGGAACTGATGATGGCAAGTACAGAGGAACCCAAGAAATCAACACTAAGCTTTCACTTTCTTAG 1137 0.4248 MSEGYEIHNNEETSSGCSQKCSSFDLNEELAFSEDNNSDTEEGYEVTTKENEKEKDEGTSGNGSSTSREGSERRGTVRQYVRSKMPRLRWTPELHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRSIQEAGRRSLILHQSSMSPHQHFKMGNGGIILATNFNKHTPFQSLLQPSFSLSRSHTNDTASRHQHWYVNHQASRIPMASSQIQAKDTRGRIAPMRPSQLLEEKRWPPLEIMNNHQTKFKRLLPSNPIVAPKNGSQAVQPAEWSSVNNTSIREYLSNNSNEPRNYSNSLKLEFDPPFRIKLNQEKLQKDKLLLPDLQLGLSHTVGTDDGKYRGTQEINTKLSLS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02356 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 142 IPR017930 -
Cca08g02356 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 378 IPR044848 GO:0003700
Cca08g02356 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 141 IPR006447 GO:0003677
Cca08g02356 378 MobiDBLite consensus disorder prediction 1 20 - -
Cca08g02356 378 MobiDBLite consensus disorder prediction 42 59 - -
Cca08g02356 378 SUPERFAMILY Homeodomain-like 84 140 IPR009057 -
Cca08g02356 378 Gene3D - 85 142 - -
Cca08g02356 378 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 378 - -
Cca08g02356 378 MobiDBLite consensus disorder prediction 28 80 - -
Cca08g02356 378 Pfam Myb-like DNA-binding domain 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02356 Cca-Chr8 57513100 57519992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02356 77 178 G2-like Transcription Factor Family AT2G42660 58.654 4.88e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca08g02356 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02356 - - gmx:102669757 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02356 08 57513100 57519992 Cca08g02356 08 57513100 57519992 ECH
Cca09g01909 09 43990824 43997388 Cca08g02356 08 57513100 57519992 PCT