Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02355 ATGGAAATGAGATGGAAAACATTTGGATTTTGTCTAAGAATTTATATTTGCTTGATCTCTGTGTCGGGAATTCAAGAGTGTTGGTCCCTTAATGATGAAGGACTGAATTTGTTAGAATTTCGAGCGAGGATAACTTATGATCCGTATAATGCTTTAGCAAATTGGAATCCCAATGATTGTGACCCTTGCGAGTGGTTCGGTGTTCATTGTCTAGATGGTAAAGTGAAAAAGCTGGAGTTAAAAGAACTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCACCTAAATTCTCTCGTGTTATGCAAGAATAACTTTTCCGGCGTCATTCCCAAAGAACTTGGAGATTTATCCAAACTAGAGTTATTGGATTTAAGGGAAAATAACTTGTTAGGAAGCATCCCAGTGGAGATTGGCAAGATGCCATTACTGAAACACTTTGTGTGGCAGGGCAACTTCAAACAATGGAACAAATCAGATTCATTGATTATTCTAACTAAAGTAGCGCTTATGAAATGCCTCAATGCCATTGCGTTGCCATTACTTAAGTTAAGAAAGCCTGCCCTTCATGGCCATGAAAAAGATTATTGTGACCTTTTGCCTAGTTCTAATGTGCCAGAGATTGCCGAAAATGTTCCAGAATTTGTCAGTTATGCACGTCGTAGGTTACTTCAATCCAGTGGCAGTAACCTTGTAGCTGCTCCTTTTAGTGGCGAATCAACTATAGAGCTTAGTTCTGTTCCAATTACCCTCAGTAGCGGATCTTTCCCAGCTGTTCAAGATGATAATAAGAAACAAAACCAATCACCTGAATCCTTGCATTCACCTTCTGATTCTCCATACGATCAAACAAGTCAACAACACACAACTAATGATTCTTCTGGAACGTTGTGGAAGTAtataattattattgttgttgtgctgatcattattttaataattctattatACATTTGGAGAAAACCAGCTGTAAAAGTAATAACCCCTTGGAAGACAGGAATAAGTGGACAATTGCAAAAAGCATTTATAACAGGGGCTCCTAAGTTGAATCGAGTAGAATTAGAGACAGCTTGTGAGGATTTTAGCAATATTGTTATTAGTGGTTTCGAAGGTTGCAACATCTACAAAGGAACATTGTCTAGTGGAGTAGAGATTGCTGTTGTTTCTACGCTAATTACTTCTTCCCAAGATTGGTCAAAGGACATGGAGATGAATTATCGCAAAAAGATTGATACTTTGTCCCGCATAAACCATAAAAACTTTATTAATCTTATTGGGTACTGTGAGGAAGAAGAACCATTCACACGAATGTTGGTGTATGAGTATGCTCCAAACGGAAATGTATTTGAGCATTTGCATGTTAAGGAAATGGAACGTCTTAATTGGAGTGAAAGGGTAAGGATTATCATGGGCATTGCATATTGTCTTCAATATATGCACCATGATCTAAATCCACCTGTCGCTCTAGCCAATCTTACTTCAAGTATGATATTTTTAACAGATGATTTTGCCGCTAAGGTTGCAGAAGTTACTTTTAAAAATATTGAGGCACCAGTTAAGCTGAAAAGTGAGTCAAAGAAATCTGAGGTGTCATTCCAGGACGAACTTAAAAACACTATCAATGACTTTGGAATGTTATTGCTTGAAATTATCTCTGGGAAATTGCCTTACTCTGAAGAACAAGGCAACCTTGTTGCTGAGTACTTAAGTGACAAGAGAAGCATCAACTACATGATTGATCCCACCTTGGAGTCTTTCAAGGAGAATGAACTTGATGCCATTTGTGAGGTAATCCAAGATTGTATCCAACCTGATCCTAAGTTAAGACCAGAAATGAGGGACGTGACTTCTAAATTGAGAGAAACGCTTGGCATTTCACCTGAGCAAGCAGTCCCAAGACTTTCTCCACTTTGGTGGGCTGAACTGGAGATCTTGTCAGTAGAGGCAACTTAA 1962 0.3797 MEMRWKTFGFCLRIYICLISVSGIQECWSLNDEGLNLLEFRARITYDPYNALANWNPNDCDPCEWFGVHCLDGKVKKLELKELSLEGTLAPELGKLSHLNSLVLCKNNFSGVIPKELGDLSKLELLDLRENNLLGSIPVEIGKMPLLKHFVWQGNFKQWNKSDSLIILTKVALMKCLNAIALPLLKLRKPALHGHEKDYCDLLPSSNVPEIAENVPEFVSYARRRLLQSSGSNLVAAPFSGESTIELSSVPITLSSGSFPAVQDDNKKQNQSPESLHSPSDSPYDQTSQQHTTNDSSGTLWKYIIIIVVVLIIILIILLYIWRKPAVKVITPWKTGISGQLQKAFITGAPKLNRVELETACEDFSNIVISGFEGCNIYKGTLSSGVEIAVVSTLITSSQDWSKDMEMNYRKKIDTLSRINHKNFINLIGYCEEEEPFTRMLVYEYAPNGNVFEHLHVKEMERLNWSERVRIIMGIAYCLQYMHHDLNPPVALANLTSSMIFLTDDFAAKVAEVTFKNIEAPVKLKSESKKSEVSFQDELKNTINDFGMLLLEIISGKLPYSEEQGNLVAEYLSDKRSINYMIDPTLESFKENELDAICEVIQDCIQPDPKLRPEMRDVTSKLRETLGISPEQAVPRLSPLWWAELEILSVEAT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02355 653 MobiDBLite consensus disorder prediction 263 295 - -
Cca08g02355 653 Gene3D Phosphorylase Kinase; domain 1 336 445 - -
Cca08g02355 653 SUPERFAMILY Protein kinase-like (PK-like) 377 624 IPR011009 -
Cca08g02355 653 PANTHER LRR RECEPTOR-LIKE KINASE 1 653 - -
Cca08g02355 653 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Cca08g02355 653 SUPERFAMILY L domain-like 34 158 - -
Cca08g02355 653 Pfam Protein tyrosine and serine/threonine kinase 376 622 IPR001245 GO:0004672|GO:0006468
Cca08g02355 653 ProSiteProfiles Protein kinase domain profile. 327 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02355 653 Gene3D Transferase(Phosphotransferase) domain 1 543 627 - -
Cca08g02355 653 PANTHER PROTEIN MALE DISCOVERER 2 1 653 - -
Cca08g02355 653 Gene3D Transferase(Phosphotransferase) domain 1 446 535 - -
Cca08g02355 653 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02355 Cca-Chr8 57483859 57489511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02355 14 619 Receptor kinase-like Gene Family AT2G42290 25.937 3.81e-44 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca08g02355 PK_Tyr_Ser-Thr 2.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02355 - - gmx:100788002 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02355 08 57483859 57489511 Cca08g02355 08 57483859 57489511 ECH
Cca08g02355 08 57483859 57489511 Cca09g01908 09 43966419 43972816 ECH