Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02354 ATGAATGCAAGGTTTTCACACGACAAAATTTTCGAAAAACAAAACAATAAGACATTTAAGGTGACATTGGACCCCGCAAAAGCCGCCAAAGGCCGCCGCTTATATTCATTGGTGTTGGTAATTTACTTCACGGCCTTCCACCACAGTCAAAAGCTGCGAGACAAGGCTCACTCCCGCTCCCTCTCCGCAAAGCGTCAAAAGCCTCGTAGTAGGCAATTGCTGCGCGTCACGGTCCATTTGAAGGAGTACTACACTTTCAAATGGGCCGCGGCCCGTGACGATGTCCCGGTGTTCTTCTCCCCCTCGTGGCTGACCCCTCTGGAGAATGCTTTCCTCTGGATGACGGGGTGGAGACCCTCCGTGGTGCTGAAGCTCTTGGAGAATCTGAAGAAGCAGGAGGCTCTCATGCTGAATGAGGAGCAGAACAGGAAGACTCACGATCTGAGGGTGAGGATAAGCATGGAGGAGGAGAGGGTGGAGGCCGAGATGGAGAGGCTCCAGATGGCCTTGGCTGGCCGCAAGATGGTGGAGCTGGCCAAGCTGTCCAGCAATGGTGATGGTGATGCTGCTGCCGTGGACATGGCGCTGAAGGGGGTCCTCGCGGGGCTGGAGAGGGTCATGAAGGCTGCTGATTGCGTGAGGCTCAAGACACTCAAGGGGATCTTGGATGTGCTCACTCCCATGCAGTGTGTCGACTTTCTGGCGGCAAATATTGCCATGCAGCTTCGCCTCAGGGAATGGGGCATGAAGGACATGAATGTCAACCAGGACAACAACTGA 780 0.5449 MNARFSHDKIFEKQNNKTFKVTLDPAKAAKGRRLYSLVLVIYFTAFHHSQKLRDKAHSRSLSAKRQKPRSRQLLRVTVHLKEYYTFKWAAARDDVPVFFSPSWLTPLENAFLWMTGWRPSVVLKLLENLKKQEALMLNEEQNRKTHDLRVRISMEEERVEAEMERLQMALAGRKMVELAKLSSNGDGDAAAVDMALKGVLAGLERVMKAADCVRLKTLKGILDVLTPMQCVDFLAANIAMQLRLREWGMKDMNVNQDNN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02354 259 Coils Coil 122 143 - -
Cca08g02354 259 Pfam Seed dormancy control 52 127 IPR025422 GO:0006351|GO:0043565
Cca08g02354 259 ProSiteProfiles DOG1 domain profile. 40 254 IPR025422 GO:0006351|GO:0043565
Cca08g02354 259 PANTHER PROTEIN DOG1-LIKE 4 64 256 - -
Cca08g02354 259 PANTHER - 64 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02354 Cca-Chr8 57471225 57473777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02354 76 245 bZIP Transcription Factor Family AT3G12250 33.918 1.32e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02354 - - ccaj:109812720 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02354 08 57471225 57473777 Cca08g02354 08 57471225 57473777 ECH