Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02352 ATGGCCGACGTGGTAGCGAAGAGCAGCCTGATGAGCCCGAGCAAGAAGGAGGCGAACAACCTCTTAGGGCGATTCGAGATTGGGAAGCTGCTGGGGCATGGAACCTTCGCGAAGGTGTACTACGCGCGGAACCTGAAAACGGGGGAGGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATTCTGAAAGGAGGGTTGGTGGCCCACATAAAGCGCGAGATCTCCATTCTCCGGCGCGTGCGCCACCCCAACATCGTGCAACTGTTCGAGGTCATGGCCACCAAGAGCAAGATCTATTTCGTGATGGAATACGTCCGCGGCGGCGAGCTTTTCAACAAGGTCGCCAAGGGAAGGCTCAAAGAAGAGGTTGCCAGGAAATACTTTCAGCAATTGATCTCCGCCGTCGGATTCTGCCACGCCCGTGGGGTCTTCCACAGGGATCTCAAACCCGAGAATCTCCTCCTCGACGAGAACGGTAACCTTAAGGTCTCCGATTTCGGCTTGAGCGCGGTTTCCGATCAAATCCGACAGGACGGTCTCTTCCACACTTTTTGTGGGACCCCCGCGTATGTCGCTCCCGAGGTTTTGGCCCGGAAAGGCTACGACGGCGCCAAGGTTGATCTTTGGTCGTGTGGGGTTGTCCTGTTCGTTTTAATGGCTGGCTATTTGCCTTTCCACGACCAGAATGTTATGGCCATGTATAAAAAGATTTACAGAGGCGAGTTTCGTTGCCCGAGGTGGTTTTCTCCTGATTTGTCAAGGCTTCTCACGAGGCTTCTTGACACCAAGCCCGAGACTCGAATTGCCATTCCTGAGATCATGGAGAACAAGTGGTTCAAGAAAGGCTTCAAGCAAATCAAGTTTTATGTCGAGGATGATAGACTCTGCAATGTGGATGACGCTCTTTTGGATAGCGTCGACGATGACACGGCTTCCATTGCTTCCATGTCGGATTACTCCATCTCCGAGTCTGATTCCGAGATCGAGACTCGTAGGAAGAATGCCCCTTTGCCTAGACCTCCTAGTTTGAATGCTTTCGACATTATATCTTTCTCACCAGGCTTTGATCTCTCTGGCTTGTTCGAGGAGAAGGGGGATGAGACCAGGTTTGTGACTGCTGCACCGGTTTCCAGGATTATTTCAAAGTTGGAGGAGATTGCTCAGTTGGTTAGATTCTCCGTGAGGAAGAAGGATTGCAGGGTGAGCTTGGAGGGTACCCGAGAGGGTGTGAAGGGGCCCTTGACTATTGCTGCTGAGATATTCGAGTTGACTCCTTCCTTGGTTGTGGTGGAGGTGAAGAAAAAGGGAGGGGACAGAGCTGAGTATGAGAGGTTTTGCAACGAGGAGTTGAAGCCCGGCCTGCAGAATTTGATGGCGGAGGACAGTGCTACTTCTTCCGCTTTGTCTACACCTACTCAGCCTTCCCTACTCCGTGGCCTTTCTGAGCCTGTGCCGGATATTTCTGATATTCAAACCCCACGATATATACCTTCTGAAGATTGA 1503 0.5196 MADVVAKSSLMSPSKKEANNLLGRFEIGKLLGHGTFAKVYYARNLKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVDDALLDSVDDDTASIASMSDYSISESDSEIETRRKNAPLPRPPSLNAFDIISFSPGFDLSGLFEEKGDETRFVTAAPVSRIISKLEEIAQLVRFSVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNEELKPGLQNLMAEDSATSSALSTPTQPSLLRGLSEPVPDISDIQTPRYIPSED 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02352 500 SMART serkin_6 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02352 500 SUPERFAMILY Protein kinase-like (PK-like) 22 280 IPR011009 -
Cca08g02352 500 ProSiteProfiles Protein kinase domain profile. 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02352 500 Gene3D Transferase(Phosphotransferase) domain 1 14 335 - -
Cca08g02352 500 MobiDBLite consensus disorder prediction 461 500 - -
Cca08g02352 500 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02352 500 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cca08g02352 500 PANTHER - 8 466 - -
Cca08g02352 500 CDD CIPK_C 344 455 - -
Cca08g02352 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cca08g02352 500 ProSiteProfiles NAF domain profile. 338 362 IPR018451 GO:0007165
Cca08g02352 500 CDD STKc_SnRK3 24 278 - -
Cca08g02352 500 Pfam NAF domain 340 396 IPR004041 GO:0007165
Cca08g02352 500 MobiDBLite consensus disorder prediction 461 477 - -
Cca08g02352 500 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 466 - -
Cca08g02352 500 Gene3D Kinase associated domain 1, KA1 338 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02352 Cca-Chr8 57429469 57431737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02352 1 461 CBL-interacting serine-threonine protein kinases AT4G18700 78.541 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca08g02352 Pkinase 5.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02352 - - gmx:100790133 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02352 08 57429469 57431737 Cca08g02352 08 57429469 57431737 ECH