Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02350 ATGAAGCCCTTTCGCACATTCTTCTTGATTCTCCTCTCGCTGCTTGTTCTCGTTGAATCTTCATGCAAAAACGAAGACCAGGGGCTTGTGTCAAAGGCCTTCCAATCCGTGTCTGGATTCAACGCTTCCAAAGGTTCCATTTTTAAGTGTTCTAATAATGCTGAGATTGAGGGGATAAATCTCTCATCCAAAAACCTAAGTGGAAGCATCTCGTGGAAGTATCTGAGGAACATGTCCATGTTACAGGTTCTGGATCTGTCTGGGAATTTTCTTCAAGGCCAGGTTCCAAACTGGTTTTGGACAAGCTCAACCTTAGTAACAGTGAACCTTTCCAACAACAGGTTGGGAGGGAGCATCAACCCCACTTCTCAAAACGGTTTCTTTTCATCACTGCAAACGCTAAACCTCTCCCACAACAGGTTCACCAACCAGCTTCACCTCTCCGCTTTCTCAAACCTTAAAAGCCTCGACCTTTCGCACAACAACCTCGGAACCATGCCTTCCGGCTTCCAAAACCTCACCCATCTACACCACCTCGACCTCTCCAACTGCAACATCAAAGGAAACGTAAAACCCATTTCTTCCCTCACCTCACTCTCCTTCTTGGACCTATCCAACAACACCTTAAACGGTAGCTTCCCCTCCGACTTCCCTCCCCTGAACGCCATCAAGTTCCTCAACATCTCCCGCAACAACTTCAAAGCATCCACTACGCTAGACAGGTTCAAGAAATTCGGGAAATCCGCGTTCATTCACGCCGGCCACAACTTCAACTACAACGCATCCAAAACAGCAAAGCTAAGTTCAAGCTCAAGTTCAAGTTCACACGAAGAGCCCCACCCCATTCACGAGGTGAAACAAAAGTCAAAACAGAAAACCAGAATCATGATTGTTGCCTTGTCCTGTTCCTCGGCACTAGTGGTTGTCGTGTTGTGCACGTGCGCGGTGTGGTGTTGCAGAAGGAAGAGGCAATTGGCGAAGAGGAACAAGTGGGCGATATCGAAGCCGGTCCCAGTGAGCATGAAGATGGAGAAATCAGGACCTTTTGCGTTTGAAACAGAGTCGGGGACGTCGTGGGTGGCGGACCTGAAAGAACCGTCTTCCGCCGCCGTGGTGATGTTGGAGAAGCCGCTGATGAACCTCAGCTTCGTGGACCTCATCGCTGCCACGTCACACTTCGGCAAAGACTCTCTCCTGGCTGAGGGAAGGTGTGGGCCCGTTTATCGCGCTGTCTTACCCGGAGACATCCACGTGGCAATCAAGGTCCTCGAAAACGCCAGAGAGGTCCATCATCATGACGCTGTCGCTCACTTCCTTCACCTTTCTCAACTCAAACACCCCAATCTCTTGCCCCTCTCGGGTTACTGCATTGCAGGGAAGGAGAAGCTGGTGTTGTACGAGTTTATGTCAAACGGGGATTTAGGCAGGTGGCTGCATGAGCTACCAACGGGGGAGACTAACGTCGAGGATTGGAGTGGTGACACGTGGGAGATTATTCAAAACGGTGGCGTTTCACGGGAGAAGATGGGGTGGCCGATACGCCACCGTATTGCCGTCGGGGTGGCGCGTGGGTTGGCGTTTCTCCACCACGCTGGGTCGAGGCCCGTCGTGCACGGCCATCTGGTCACGTCGAACGTGCTTCTGGGCGACGACTTCGAGCCGAGAATCGCGGACTTCGGGTTTCGGAGGCTGGGGCGAGAGAGTGGTGGCGCCAGCTGCAGCACGGAGACGGACGTTTACTGCTTCGGGGTGGTGCTGATGGAGCTGCTGACGGGGAGGGCCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGGTGGTGAGGGAGGGGCACGGGGTGAGGGCGTTGGATGAGAGGCTCACCCTCGGCGGCGGTGACTCGGAGAGTGAGATGGTGGAGAGCCTCCGAGTCGCTTATTTGTGTACGGCCGAGTCCCCGGGGAAGAGGCCCACCATGCAACAGGTTTTGGGCCTTCTCAAAGATATTCACCCGAGTCATGGACTCGACTGA 2010 0.5363 MKPFRTFFLILLSLLVLVESSCKNEDQGLVSKAFQSVSGFNASKGSIFKCSNNAEIEGINLSSKNLSGSISWKYLRNMSMLQVLDLSGNFLQGQVPNWFWTSSTLVTVNLSNNRLGGSINPTSQNGFFSSLQTLNLSHNRFTNQLHLSAFSNLKSLDLSHNNLGTMPSGFQNLTHLHHLDLSNCNIKGNVKPISSLTSLSFLDLSNNTLNGSFPSDFPPLNAIKFLNISRNNFKASTTLDRFKKFGKSAFIHAGHNFNYNASKTAKLSSSSSSSSHEEPHPIHEVKQKSKQKTRIMIVALSCSSALVVVVLCTCAVWCCRRKRQLAKRNKWAISKPVPVSMKMEKSGPFAFETESGTSWVADLKEPSSAAVVMLEKPLMNLSFVDLIAATSHFGKDSLLAEGRCGPVYRAVLPGDIHVAIKVLENAREVHHHDAVAHFLHLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSGDTWEIIQNGGVSREKMGWPIRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLGDDFEPRIADFGFRRLGRESGGASCSTETDVYCFGVVLMELLTGRAGTAETVVWVRKVVREGHGVRALDERLTLGGGDSESEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSHGLD 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02350 669 Gene3D Phosphorylase Kinase; domain 1 353 468 - -
Cca08g02350 669 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
Cca08g02350 669 MobiDBLite consensus disorder prediction 268 288 - -
Cca08g02350 669 PRINTS Leucine-rich repeat signature 153 166 - -
Cca08g02350 669 PRINTS Leucine-rich repeat signature 196 209 - -
Cca08g02350 669 SUPERFAMILY L domain-like 49 236 - -
Cca08g02350 669 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515
Cca08g02350 669 SUPERFAMILY Protein kinase-like (PK-like) 373 659 IPR011009 -
Cca08g02350 669 Pfam Leucine rich repeat 130 186 IPR001611 GO:0005515
Cca08g02350 669 Gene3D Transferase(Phosphotransferase) domain 1 469 667 - -
Cca08g02350 669 Pfam Leucine Rich Repeat 81 99 IPR001611 GO:0005515
Cca08g02350 669 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 669 - -
Cca08g02350 669 Gene3D Ribonuclease Inhibitor 124 280 IPR032675 -
Cca08g02350 669 SMART LRR_typ_2 173 203 IPR003591 -
Cca08g02350 669 SMART LRR_typ_2 128 152 IPR003591 -
Cca08g02350 669 SMART LRR_typ_2 153 172 IPR003591 -
Cca08g02350 669 SMART LRR_typ_2 78 101 IPR003591 -
Cca08g02350 669 Pfam Protein tyrosine and serine/threonine kinase 397 564 IPR001245 GO:0004672|GO:0006468
Cca08g02350 669 PANTHER KINASE, PUTATIVE-RELATED 7 669 - -
Cca08g02350 669 Gene3D Ribonuclease Inhibitor 14 123 IPR032675 -
Cca08g02350 669 ProSiteProfiles Protein kinase domain profile. 393 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02350 Cca-Chr8 57404257 57407165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02350 59 662 Receptor kinase-like Gene Family AT5G07280 32.508 3.68e-77 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Cca08g02350 PK_Tyr_Ser-Thr 3.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02350 - - gmx:100778920 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02350 08 57404257 57407165 Cca08g02350 08 57404257 57407165 ECH
Cca09g01912 09 44016375 44019210 Cca08g02350 08 57404257 57407165 PCT