Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02348 ATGCTTTTCCTGAACCTCAGAACCGAACATCCCACTGGAAAAGTTCCAACCTTTGTTGCTCCCCGCTACTTGAATCGGTTTTTTCGTTTCATGGACGATGTCAAAGTGGTTGCTTGCCTCGTTTCATTGTTTATGTGTTATTGGCTGCTTCTCGTTGAGGCCACTGATAGTCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGAATGATGACTTGCATGTCTTGGATGCTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTTGCTTGCTCTCCCGAGGGTTATGTAATTTCCCTGGAAATGGCCAGTGCAGGGTTATCTGGATCGATTTCCTCAGGAATTGGAAACTTGAGCCACCTCCGAACATTGTTATTGCAGAACAACAAGTTATCTGGTCCCATCCCGACTGAGATAGGAAAGCTGGTAGAGCTTCAAACCCTCGACCTTTCTGGTAACCAGCTTGTTGGGGAAATTCCTAATTCTTTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTCACAGGCCTTTCATTCTTGGACTTGTCATTCAATAACCTCAGTGGTCCCACACCAAAAATTTTAGCAAAAGGTTATAGTATTTCAGGAAACAACTTCCTCTGCACCTCTTCCTCACAAATTTGTATGGGCTTCTCAAAACCAGTAAATGATACAGGGTCATCTCGGACAACTGGTGGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTGCTTCTTGTCTTTTGGTTGCGGTGGTACAGATCACACATTCTCTACACATCTTACGtggagcaagattgtgaatttgatattggccatttgaAGAGGTTTTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTAGGACAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAATCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTACCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGAGAAAAGCCATCTTTGGACTGGAACAGGCGAATGCGTGTTGCTCTGggggcagcacgtggacttctatatttgcatgaacaatgcaatccaaaaataatccacagggatgttaaggctgcaaacatcttgttagatgaaagttttgaagctgtggtgggggattttggtcttgctaagctcttagatcaaagggattcacatgtaactactgcagtgcggggtactgtagggcacattgccccagaatatctcTCAACTGGCCAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTCTGGAGCTCATAACAGGACACAAGGCACTGGATGCTGGAAATGGTCAGGTCCAAAAGGGAATGATGCTTGATTGGGTTAGAACCTTATTTGAGGAGAAGCGGCTGGAAGTGTTGGTTGATAGGGATCTGAGGGGATGTTTTGATCCAGTAGAGTTAGAGAAAGCAGTGGAGTTGTCTTTACAGTGTACTCAGTCGCTTCCCACATTGCGGCCGAAGATGTCAGAAGTTTTGAAGATTCTAGAAGGTCTAGTAGGGCAGTCAGTGCGGGCAGAGGAGTCACAAGGGGGGACTAACCTATATGATGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTCCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGCCCTCGATAA 1953 0.3835 MLFLNLRTEHPTGKVPTFVAPRYLNRFFRFMDDVKVVACLVSLFMCYWLLLVEATDSLLSPKGVNYEVAALMSMKSKMNDDLHVLDAWDINSVDPCTWNMVACSPEGYVISLEMASAGLSGSISSGIGNLSHLRTLLLQNNKLSGPIPTEIGKLVELQTLDLSGNQLVGEIPNSLGFLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQICMGFSKPVNDTGSSRTTGGHHQRVLAVVIGFSCTFVISVVLLVFWLRWYRSHILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNGQVQKGMMLDWVRTLFEEKRLEVLVDRDLRGCFDPVELEKAVELSLQCTQSLPTLRPKMSEVLKILEGLVGQSVRAEESQGGTNLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02348 650 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 39 650 - -
Cca08g02348 650 Gene3D Transferase(Phosphotransferase) domain 1 403 611 - -
Cca08g02348 650 SMART serkin_6 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02348 650 Gene3D Phosphorylase Kinase; domain 1 297 402 - -
Cca08g02348 650 SUPERFAMILY L domain-like 66 236 - -
Cca08g02348 650 Pfam Leucine rich repeat N-terminal domain 65 104 IPR013210 -
Cca08g02348 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Cca08g02348 650 Pfam Protein kinase domain 328 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02348 650 ProSiteProfiles Leucine-rich repeat profile. 156 179 IPR001611 GO:0005515
Cca08g02348 650 SUPERFAMILY Protein kinase-like (PK-like) 310 600 IPR011009 -
Cca08g02348 650 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Cca08g02348 650 Gene3D Ribonuclease Inhibitor 64 244 IPR032675 -
Cca08g02348 650 ProSiteProfiles Protein kinase domain profile. 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02348 650 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 39 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02348 Cca-Chr8 57388099 57392327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02348 72 650 Receptor kinase-like Gene Family AT5G45780 71.773 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca08g02348 Pkinase 5.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02348 - - ccaj:109812711 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02348 08 57388099 57392327 Cca08g02348 08 57388099 57392327 ECH