Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02341 ATGGGAGCAGTGAGTGATGGAAGCCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGATTCTCTTCAAAAGGTTAGGCTTTGGCTTGGAACATTCGACACTGCTGAGGATGCAGCTAGGGCTTATGACAATGCTGCTAGGGCTTTGAGAGGTGCCAATGCTAGAACCAACTTTGAGTTGCCCTCATCAGCATCTTCTGGTGGTGCTACTAAGCGTGGTGGTGGTGGTTCCAACTTCATGCCTGATCGCACTGAACCCTTTTCTTTTGAGGATGTGAATGAGCCAGATGCAGAAGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAGCTTCTTGATGGAAAGAAAGACAAGTTTCACTTTCCATTTCTTGCTAATTGTGCTTCCCCGGTTGCTCAATCTGGCATGGTTTCAAGATCATCTCCGATCAACTGTTCTGGGAAGAAAGAGTTGTTACCACCATGCAATAACAACCCTGTGCATGGTTTGATGAGTAGTACTACTCTGACTTCAAACACTTGTGCTAGGAGTGTGGTTATCCCAAATCATGATCATGAAGGTGCTGTAGCAAGCAGTGATAGAGTCAACTCTCATCAACTTTGTCAAACCCCACCTATGGCAAGCATGGCATGGCCCAATGAAGTGGCATGTGAATTGCCTTTGCCCTCACATATGAGCCAAGTTCCTGATAATAGCCTTCTTGCGTCTGCCACCTTGACATGGCCACTTTCTGAGGTAATTGAGTCCACTACTGTTGATATGACATGCACAGATCAGGGACCATCAAGTAGCAACAGAAGTGGCCAATTGAATATGGTGACCATGCAGTTGCCTTCAGTTGGTGGTGCTGCAACTGAGAGTCTTTGGACATTGGATCAGCAACAACAATTTGTGCAATGTGAGAACAACAGTTGGTTTAGTTTTAATGGATCTTGGGATCCTCTCCTTTATGTGCCCTCAGAGCTAACTTGTGATGAGTGGAAACCTTTAATAGTAATGATAGCAGTTGTTTTTTCTCTTGCGGCATTGAATATTCTTCTCAAGAAAGTCCTTGAAGAAGAAATCAACCCTTTTGTTTTTATCACATACCGGCTGTTAATGTCTACCATTTTCATAGCCCCAATTGGCTATTTTATAGAAAGAAACGACAGACCAAGGCTCACATTTCGAATTTTATGTTACCTATTCTGCAGTGCCATTGTTGGGACATCAGTCACTCAATACTTTTTCCTTCTGGGGATCCAATATACTTCTGCCACCTTTGCTGGTGCTTTCATCAACATAGTGCCTGTGCTCACATTCATAATGGCATTACCATTTGGAATAGAGACCGTGAAAATCAGACGCAACAGTGGGATAGCCAAGATTCTTGGTTCACTGGTGTGCATAGGTGGTGCATTGATGTTGACACTCTACAAAGGAAAGCCACTCTTTAATTTTTCTCATAATGAACCTGCAGCTCCTGTGGCCAAGAGTGCAGTTAAGCTAGATTTTGCAAGAACAATACCAGGATGGACTATTGGTGTGATAGCGTTGGTTTTAGGAACAATCTTTTGGTCTTCTTGGTTTATCTTACAATCAAAAATAAGCAAGAGATATCCACGCCAGTATTCTAGCACAGCCATCATGTCCTTCTTTGGAGTCATTCAATCAGCTGTTATTTGCTTCTCCACTGACCACAACTTGTCCATATGGGTTCTCAAGGGAAAGATACAGATATTTGTCATTCTTTATGCAGGGGTGGTTGGATCGGGTTTGTGTTTTGTGGGCATGTCATGGTGTGTAAAGAAGAGGGGTCCTCTTTTTACAGCAGCATTCAGCCCTTTTGTTCAGATAATAGCAGCCATGATTGATGTCCCTGTCTTGCATGAGCAGCTCCATCTTGGAAGTGTGCTGGGATCCATTTTGGTGATTATCGGATTATACATTCTTCTGTGGGGAAAGAAAATAGAAATGCAGAATCATGAGAGCAAGTTAGTCCAAGAAGCTGAGGAAACCAAGAATCAAGAGCTGCAAGTGCAAATGCAACAGTTGACAGCGTATGCTCATTCAGAATCGTATGATTCGCAGGGCCACTGA 2133 0.4393 MGAVSDGSRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPSSASSGGATKRGGGGSNFMPDRTEPFSFEDVNEPDAEAEGLLGALKAKLLDGKKDKFHFPFLANCASPVAQSGMVSRSSPINCSGKKELLPPCNNNPVHGLMSSTTLTSNTCARSVVIPNHDHEGAVASSDRVNSHQLCQTPPMASMAWPNEVACELPLPSHMSQVPDNSLLASATLTWPLSEVIESTTVDMTCTDQGPSSSNRSGQLNMVTMQLPSVGGAATESLWTLDQQQQFVQCENNSWFSFNGSWDPLLYVPSELTCDEWKPLIVMIAVVFSLAALNILLKKVLEEEINPFVFITYRLLMSTIFIAPIGYFIERNDRPRLTFRILCYLFCSAIVGTSVTQYFFLLGIQYTSATFAGAFINIVPVLTFIMALPFGIETVKIRRNSGIAKILGSLVCIGGALMLTLYKGKPLFNFSHNEPAAPVAKSAVKLDFARTIPGWTIGVIALVLGTIFWSSWFILQSKISKRYPRQYSSTAIMSFFGVIQSAVICFSTDHNLSIWVLKGKIQIFVILYAGVVGSGLCFVGMSWCVKKRGPLFTAAFSPFVQIIAAMIDVPVLHEQLHLGSVLGSILVIIGLYILLWGKKIEMQNHESKLVQEAEETKNQELQVQMQQLTAYAHSESYDSQGH 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02341 710 MobiDBLite consensus disorder prediction 1 25 - -
Cca08g02341 710 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Cca08g02341 710 PANTHER WAT1-RELATED PROTEIN 347 685 - -
Cca08g02341 710 MobiDBLite consensus disorder prediction 77 91 - -
Cca08g02341 710 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Cca08g02341 710 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Cca08g02341 710 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Cca08g02341 710 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Cca08g02341 710 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cca08g02341 710 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Cca08g02341 710 Pfam EamA-like transporter family 525 663 IPR000620 GO:0016020|GO:0016021
Cca08g02341 710 Pfam EamA-like transporter family 347 481 IPR000620 GO:0016020|GO:0016021
Cca08g02341 710 PANTHER WAT1-RELATED PROTEIN 347 685 IPR030184 GO:0016021|GO:0022857
Cca08g02341 710 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Cca08g02341 710 MobiDBLite consensus disorder prediction 77 105 - -
Cca08g02341 710 SUPERFAMILY Multidrug resistance efflux transporter EmrE 588 667 - -
Cca08g02341 710 Coils Coil 670 690 - -
Cca08g02341 710 SUPERFAMILY Multidrug resistance efflux transporter EmrE 381 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02341 Cca-Chr8 57286796 57301333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02341 343 671 Nodulin-like Gene Family AT1G11460 36.667 1.30e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g02341 EamA 1e-14 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02341 - - gmx:100782136 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01919 09 44117539 44120581 Cca08g02341 08 57286796 57301333 PCT