Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02337 ATGACTAGGGCTGTCCGCAGTAGGATACTTAAAGATGCGAATGGTGATATTAGTGATCATCTACGCAACCACATCCACTTGACAAATTGTATTCACCTTAAGAACCATATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGAGACCTAGTTGTGCTGCAGAGATCACGATCACTTAGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTAGTTGACTTGCTTTTCAGAAGAGTTGAAAATGATGCCGCGTCTCAAGGGGGAAGAAAATCTGTTGGTGTAGAGCGCAGGAAGGAAGGAAGAAGAAATTCTGGCACTTCACCACCCTTGGTGAGTATAGGTTCATCAAGAGTTGCTCCGGGTGAGGTTGGTAGGGGTAATGATGGGATGATGGTGCCTAGTGAACGTAGTAGCAGGAGTGGAATGGGAGATGGAAGGAGAGTTGGGAGGGAAGAATCCGGTAGGAAGAATGATAAGCCTGACCTTTTGGATGTTAATCATGGAGAGCCTCTCAATCAAGCTGGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTGAGTCTAAAGATAGAAAGAGCAAGCAGAGGGGGAAGAATGTTCGAGATGTTCAAGTTAAGACCCTTTCTCAGCAGCTAAATGATGTTCCATTGGATAGTGATGATTTAGCGTCATCGAACATTCATTTTCGAGGAAGGTTTCCTAGACAGGAGAAGATTATTGAGGAGGCAGAAGCCCGGATGCGCAGTCATGGTGGTGGAATGAATAGGGGGAAAAGGCGCAAGTTTCGAAGCACCCGAAGAACTCGGGTTGCTACAACATCAAGGGATATTGGAGCTGAGAATGAACTGTCTGTTGCTTCCAACTCATTAGCTCAGGCTTCAGCTCACCACAAATATCACTTGGAGGAGGCTGAGGAGTTTGCCGATGACAATGTTACTAGGGCTCCAAAAAATGGGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTCTCTTGTGGTTTATCTGACTCAAGGTTGAAGAAAGGGATATTTGCTGCCAATGGAAGAAATATTTCTGAGATGCCGATGGCATCTGAGCGCTCAAGCTCTTGTACAAAGTCTGATGCAGAGGCACTGCCTTTACTAGTTGAGGCATCTGGATCTCACGCAAGCACTGAAAATGCTTGTTGGGATCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAATTTATTCAAGCATGATATTGATTCTGATCTCGCTTCTGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGTCATGGTAGACACCAAAGTTTAACACAAAAGTATATGCCTCGAACCTTCAGAGATATGGTTGGGCAGAATTTAGTGGCACAAGCTCTTTCCAACGCAGTTGTCAAAAGGAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTCTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGATTTTGCAATTATTGCATAGCACATGATATGGGGAAGAGTAGAAATATACGGGAAGTAGGTCCAGTTAGTAATTTTGATTTTGAGGGCATCATGGACCTACTTGACAATATGGTTGTTTCCCAGCTTCCGTCACATTACAGAGTTTTTATTTTTGATGACTGTGATACTCTGTCAATGGATTGTTGGAATGCCATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTTCCAAAGCTGAAGGATGCAGATATTATATATACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGAGAAGGATGCCCTGAAACTCATTGCATCAAGGTCAGACGGATCACTGAGAGATGCTGAGATGACCCTTGAACAACTTAGCTTGCTTGGGCAGAGAATATCAGTTCCTCTTGTTCAGGAACTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCTGACACAGTTAACACCGTGAAGAATTTGAGAGTGATTATGGAAACTGGTGTTGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACTTATGATTTCACAAAAGAAAGGCGAAGAAGGAAATTCTTCCGAAGACAGCCATTGTCCAAAGAAGACATGGAAAAGCTGCGCCAAGCTCTGAAAACCTTATCCGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGTTAACATGGTTGACAGCTGCGTTGCTTCAACTTGCTCCAGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTTGCTCTAAAAGATACAGATGTGAGAGAAGCAGCTAGACTGACTGGTAACCCTGTTGACATTTCTAACAAAGGGAGACGATTATCGATGGATGCTAGAATTGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTATGACCAAAGGTCTTGGTTCTGAGAAAAAACGACATAGTGTGTCTGGTTTTACCCCTCAACAAGCGCATTTGCAAGCTGCTGATAAGATTAGGATGAGTGAGAGGCAGATTTTGGGTAAAAACCGTAGAGACATCGAAGAGATATGGTTAGAGGTGCTTGAGAGGATACAAGTTTCTGGTCTGAAAGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACTGACCAAATCTACGGCTGAGAAGTTTAGGGGCCATATCTTGCAAGCATTTGAATCTGTACTTGGATCTTCTATAACAATAGAAATTAGATGCGAGTCAAGTAAAGATGCAGGCTCAGCTGTTCAACTGCCTCTCAATGATAGTTTGTCTCAGATTGGCGACTTTAATGGTGTTGGTACTCTAGCTCATCCATCACTAACTGGTTCTGTTGAAAATAGAATGGGTGAAATTGTAGAAGAAGCAACTTCTCAAGTGGAGCACAAGAAAAACGAGCAGCAGGTTGATGCTTGTGGAACATCTTATAAAAGTTTAGAAGGTACAGGTGTAGGACAAGCATCAACATCGCAAAAAAAGCCAATTGTTAAGTCACATTTAGACCAAAGAAAGCTTATGGAGCAAGGTCAAAGTCGAAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAGAAGCTAGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCAAGAGTGACCCGGCGAAAGCTGTCACGCTTGAAAATTCGAACCCGAAAATCACGTGCACTGCTGAATCTTGTCTCATGTGGGAAATGTTTGTCTACAAAATCTCCAAGGTAG 3561 0.4297 MTRAVRSRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFRRVENDAASQGGRKSVGVERRKEGRRNSGTSPPLVSIGSSRVAPGEVGRGNDGMMVPSERSSRSGMGDGRRVGREESGRKNDKPDLLDVNHGEPLNQAGKSLAEDVISRHSESKDRKSKQRGKNVRDVQVKTLSQQLNDVPLDSDDLASSNIHFRGRFPRQEKIIEEAEARMRSHGGGMNRGKRRKFRSTRRTRVATTSRDIGAENELSVASNSLAQASAHHKYHLEEAEEFADDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRLKKGIFAANGRNISEMPMASERSSSCTKSDAEALPLLVEASGSHASTENACWDHDYSGELGLFGDNLFKHDIDSDLASEARSGDQRKLRGNRHGRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVVKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFEGIMDLLDNMVVSQLPSHYRVFIFDDCDTLSMDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIEKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFALKDTDVREAARLTGNPVDISNKGRRLSMDARIENFHAGSSADGMTKGLGSEKKRHSVSGFTPQQAHLQAADKIRMSERQILGKNRRDIEEIWLEVLERIQVSGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCESSKDAGSAVQLPLNDSLSQIGDFNGVGTLAHPSLTGSVENRMGEIVEEATSQVEHKKNEQQVDACGTSYKSLEGTGVGQASTSQKKPIVKSHLDQRKLMEQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRTRKSRALLNLVSCGKCLSTKSPR 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02337 1186 PANTHER PROTEIN STICHEL-LIKE 3 181 1153 - -
Cca08g02337 1186 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Cca08g02337 1186 MobiDBLite consensus disorder prediction 88 210 - -
Cca08g02337 1186 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Cca08g02337 1186 Gene3D - 631 693 - -
Cca08g02337 1186 MobiDBLite consensus disorder prediction 146 171 - -
Cca08g02337 1186 Gene3D - 448 627 IPR027417 -
Cca08g02337 1186 SMART AAA_5 489 630 IPR003593 -
Cca08g02337 1186 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 181 1153 - -
Cca08g02337 1186 MobiDBLite consensus disorder prediction 259 275 - -
Cca08g02337 1186 MobiDBLite consensus disorder prediction 867 886 - -
Cca08g02337 1186 CDD AAA 471 630 - -
Cca08g02337 1186 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Cca08g02337 1186 MobiDBLite consensus disorder prediction 187 208 - -
Cca08g02337 1186 Pfam DNA polymerase III, delta subunit 473 630 - -
Cca08g02337 1186 Coils Coil 766 793 - -
Cca08g02337 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Cca08g02337 1186 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Cca08g02337 1186 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02337 Cca-Chr8 57189561 57197023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02337 456 754 Core DNA Replication Machinery Family AT1G21690 23.856 5.68e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02337 - - gmx:100809005 2118.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02337 08 57189561 57197023 Cca08g02337 08 57189561 57197023 ECH