Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02331 ATGGCTTCAGGGGCAATTTTTTCGTCGCTCCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTGGCCCCCGTTGACTTGAGCGACGTCGCTTTGGTTCAGACCCTTGTCACGGTGGCGAGCGAGATTGTGTCGTGTTTCTCGAAGCGTTGTTTCTTCTTCCAGCGCAAGAACTCGCGGTCTCTGATCCGAAGAGTGGAGGTTTTTCAGCTGCTTTTGGAGTATTTGAGCGATTCCGATTCTGGCTCGTGTCTTCCCCCAACGGCGGTGCTTTGTCTCAAGGAGCTTTACCTCTTGCTGTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAATCGAGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCACGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCTGTTAAGGATGTCGGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTCTTGCAGAAACAGTCCAGGAGGGCTAGGCTTTTTATAGATATGAATGATGATGCTCTTAGGATCCGGTTTTTCTCCTTTCTTGACGAGTTTGAGAATGGAAGGATTCCTGATTCTACTGAATTGAGGTCTTTTTATGTTGAGAAGTTGCAGATTCCGGATGCTGCTAGTTGTAGGAGTGAAATTGAGGCCTTGGAGGAGCAGATTGTAAATCATGAGGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGATTGGTGGCTATGACTAGGTATTGCAGGTTTTTGCTCTTTGGATTTGAGGAGGATGAGCTTAGTTTGGAGAATGGGACTAAGAAGAAGTCTAGAAGGAGGTTGATTACTCAGGAAATTGCTGAAACGTTTTTGACTGTTCCTAAGGACTTTTGCTGTCCAATTTCGTTGGATTTGATGAGAGACCCGGTGATAATTTCCACGGGTCAAACTTATGATAGGAGTTCCATTTCCAGGTGGATGGAAGAAGGGCATACCACTTGCCCCAAAACAGGCCAAATGCTTGCTAACACTCGCCTTGTTCCCAACCGGGCTCTCAGGAATTTGATTGTGCAGTGGTGCACTGCACATGGAGTACCCCTTGACCCTCCGGAGGTCATGGATGTCATGATGGCTGATGCTTTTGCCTCGGCATCTCCCACCAAAGCTGCCCTTGAAGCCAACAGAGCCACCGCCACGCTTCTCATTCAACAGCTCGCTCATGGCTCTCAATCTGGGAAGACTGTGGCCGCTCGGGAGATTCGGTTGCTTGCCAAGACTGGAAAGGAAAACCGCGCCTTCATTGCAGAAGCAGGGGCCATTCCTTATCTCCGGAATTTACTTTCATCGCCTGATGCTGTTGCTCAGGAGAATTCTGTGACTGCACTGCTCAATTTGTCCATATATGACAAGAACAAAAGCAGGATAATGGATGAGGATGGTTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGACACACCACAGAGGCACGGGAGAATGCTGCTGCCACGTTGTTCAGTCTATCCGCAGTCCATGACTACAAGAAAATAATTGCAGATGAGACCGGAGCGGTTGAGGCCCTTGCAGGGATGTTGCAAGAGGGGACTCCAAGGGGAAAGAAAGATGCTGTCACAGCTTTGTTCAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATAGAGGCTGGGGCAGTGACAGCTCTGGTTGGTGCTTTGGGGAACGAAGGAGTGGCCGAAGAAGCAGCCGGTGCGCTGGCCTTGATTGTCCGGCAGCCTGCTGGGGCCAAAGCAGTTGTGAATGAGGAAGCAGCGGTGGCTGGATTAATTGGAATGATGCGTTGTGGAACACCGAGAGGTAAAGAAAACGCGGTTGCAGCGTTGCTTGAGTTGTGCCGTAGTGGAGGTGCAGCTGCAACCGAAAGAGTTGTGAAGGCGCCAGCTTTGGCTGGATTACTTCAAACCCTTCTTTTTACAGGAACAAAGCGTGCAAGAAGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCGTTTGCTAGCAATTCAACTACAACTAGGGATACCAGCTTTGCCGGTGATGTTTCAGTACCAATGTCAATTTCTGTTTTATAG 2151 0.4849 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVASEIVSCFSKRCFFFQRKNSRSLIRRVEVFQLLLEYLSDSDSGSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLQKQSRRARLFIDMNDDALRIRFFSFLDEFENGRIPDSTELRSFYVEKLQIPDAASCRSEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELSLENGTKKKSRRRLITQEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLANTRLVPNRALRNLIVQWCTAHGVPLDPPEVMDVMMADAFASASPTKAALEANRATATLLIQQLAHGSQSGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPDAVAQENSVTALLNLSIYDKNKSRIMDEDGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGMLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPAGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSTTTRDTSFAGDVSVPMSISVL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02331 716 Coils Coil 214 234 - -
Cca08g02331 716 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Cca08g02331 716 Gene3D - 394 670 IPR011989 -
Cca08g02331 716 CDD RING-Ubox_PUB 294 336 IPR045210 -
Cca08g02331 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Cca08g02331 716 SUPERFAMILY RING/U-box 279 363 - -
Cca08g02331 716 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Cca08g02331 716 Gene3D - 27 146 IPR036537 GO:0007166
Cca08g02331 716 PANTHER U BOX DOMAIN-CONTAINING 12 698 - -
Cca08g02331 716 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Cca08g02331 716 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 698 - -
Cca08g02331 716 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Cca08g02331 716 SUPERFAMILY ARM repeat 396 672 IPR016024 -
Cca08g02331 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 601 IPR000225 GO:0005515
Cca08g02331 716 SMART arm_5 509 549 IPR000225 GO:0005515
Cca08g02331 716 SMART arm_5 424 464 IPR000225 GO:0005515
Cca08g02331 716 SMART arm_5 590 630 IPR000225 GO:0005515
Cca08g02331 716 SMART arm_5 465 507 IPR000225 GO:0005515
Cca08g02331 716 SMART arm_5 550 588 IPR000225 GO:0005515
Cca08g02331 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02331 Cca-Chr8 57107913 57110919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02331 1 715 U-box Gene Family AT1G29340 70.999 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02331 - - gmx:100811153 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02331 08 57107913 57110919 Cca08g02331 08 57107913 57110919 ECH
Cca09g01941 09 44365892 44368601 Cca08g02331 08 57107913 57110919 PCT