Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02330 ATGATGGAGGAAGCTCAGGGTAGTTCCAGTTCCctgccacctttcctcaccaagacttatgagatggtggatgatccttccaccaattccattgtttcctggagtcccaccaataagagtttcgttgtttggaatccaccggaattttcaagtgaattgttgcccagattctttaagcacagtaacttctccagttttataaggcagctcaacacttatGGGTTCAGAAAGATTGACCCTGAAAAATGGGAATTTGCAAATGATGATTTTATAAGAGGTCAACCACATCTTTTGAAGAATATCCATAGGCGTAAACCTGTTCATAGCCATTCTTTACAGAATGTCCAAAGTCAAGGGACTTTTCCGCTGACTGAAGCAGAACGGCAGAGTTTGAAGGATGAGATAGAGAAGCTTAAACAAGATAAAGCACAACTTCTTCGGGAGTTGGAGAGGCATGAACAGGAGTGGAAAATGTATGAAGTGCAATTAAAATGCTCAAATGACCGCTTGGAAAAGATGGAAAAGAAGCAAGAAAATATGCTTTCTTCTGTTTCTCAAGTGCTGCAGAAACCTGGGATTGCTTTAAATCTCTTGCAACTGCCAGAAAACATCATGGATAGAAAACGAAGGTTGCCAAGAAGTAGTCTCTATAGCGACAGTGCTAGCATTGAAGATCATATGGAAATTTCTCCAGTACTACCGAGGCAAAATGCACAGGGTTCCTCTATTTTAACATCAAACATGGAGCGATTGGATTTGCTCGAGTCATCCATTGAGTTTTGGGAGGAAATGTCACATGATGTTGACACTTTTTTGCAAAGTCATTCAAACTTGGATTTTGACGAATCTATGAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGATGTTGAAGTGCAGCCTAAGTCACCTGGAATTGGCATGAATTCTGAACCAGCTGTAGCTGCTGTTTCTGATCTTGATGCATCGAAAGAACAACCTGTGGGAACAGCCCCTTCAAGCAGATTATACTTCAGTTGTGATGCCCTACAATTTTATGTAATAAATATAGGACACTTCCACCATTGA 1074 0.3361 MMEEAQGSSSSLPPFLTKTYEMVDDPSTNSIVSWSPTNKSFVVWNPPEFSSELLPRFFKHSNFSSFIRQLNTYGFRKIDPEKWEFANDDFIRGQPHLLKNIHRRKPVHSHSLQNVQSQGTFPLTEAERQSLKDEIEKLKQDKAQLLRELERHEQEWKMYEVQLKCSNDRLEKMEKKQENMLSSVSQVLQKPGIALNLLQLPENIMDRKRRLPRSSLYSDSASIEDHMEISPVLPRQNAQGSSILTSNMERLDLLESSIEFWEEMSHDVDTFLQSHSNLDFDESMSCADSPAISCVQLDVEVQPKSPGIGMNSEPAVAAVSDLDASKEQPVGTAPSSRLYFSCDALQFYVINIGHFHH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02330 357 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g02330 357 Gene3D - 7 105 IPR036388 -
Cca08g02330 357 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g02330 357 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g02330 357 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g02330 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 296 IPR027725 -
Cca08g02330 357 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 296 - -
Cca08g02330 357 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g02330 357 Coils Coil 121 162 - -
Cca08g02330 357 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g02330 357 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02330 Cca-Chr8 57088402 57091896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02330 8 328 HSF AT4G18880 54.878 2.40e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca08g02330 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02330 K09419 - gmx:100784280 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02330 08 57088402 57091896 Cca08g02330 08 57088402 57091896 ECH
Cca08g02330 08 57088402 57091896 Cca09g01943 09 44386371 44388947 ECH
Cca09g01943 09 44386371 44388947 Cca08g02330 08 57088402 57091896 PCT