Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02321 ATGTCAGTGATGGCCGATAATTCAACAAACAATGGAAGCCACCAGGTGGTTTTGAATGTGAACAGTGATGCCTCCAAAAAGTGCGACTCAGATAACCAAGACTGTGTTCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACATACTTCTTGATATTTGCAGGGTGTGGTTCAGTGGTGGTGAACCTTGACAAGGAGAAGGTGATCACACAACCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCACTCAAGCAGGTACCAGCTTATGTGATAGCTCAGGTTGTTGGATCCACACTTGCTAGTGGAACTCTCAGACTTATATTCAATGGCAGGAATGACCATTTTGTAGGAACACTCCCAGCTGGTTCTAACTTGCAATCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTCGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGGTCTACAGTTCTGCTAAATGTGATGTTTACCGGGCCAATCTCAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCAATTGTGCACAATGAGTACAAGGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCGGGTACATGGGTCTACAATTTCATCAGATACACAAACAAGCCAGTGCGTGAGATTACCAAGAGTGCCTCTTTCCTCAAAGGTGGTGCAGCTGAGTGA 819 0.4554 MSVMADNSTNNGSHQVVLNVNSDASKKCDSDNQDCVPLLQKLVAEVVGTYFLIFAGCGSVVVNLDKEKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTKRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGRNDHFVGTLPAGSNLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFTGPISGASMNPARSLGPAIVHNEYKGIWIYLVSPTLGAVAGTWVYNFIRYTNKPVREITKSASFLKGGAAE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02321 272 PANTHER AQUAPORIN NIP2-1 4 268 IPR034294 -
Cca08g02321 272 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 SUPERFAMILY Aquaporin-like 37 260 IPR023271 -
Cca08g02321 272 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cca08g02321 272 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 4 268 - -
Cca08g02321 272 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 Pfam Major intrinsic protein 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca08g02321 272 Gene3D Glycerol uptake facilitator protein. 2 262 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02321 Cca-Chr8 56964737 56967190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02321 28 272 Major Intrinsic Protein MIP AT5G37820 62.449 3.66e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02321 K09874 - gmx:100786924 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02321 08 56964737 56967190 Cca08g02321 08 56964737 56967190 ECH
Cca09g01946 09 44432299 44433991 Cca08g02321 08 56964737 56967190 PCT