Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02316 ATGGGGGTTGCCAATTTCTTTGCCTTCTTATTTATTGCTCTAAGTTGCTTCCAGTTGCTCAGAATTTCTGAATCAAAATTACCCCAAGAAGAAGTTGATGCCCTTCAAGAAATTATCAGCACGATGGGTTCGGCCTATTGGAAGTTTGATGCTGATTCCTGCAAAATTGAAATGGTTGGACTAACTCGTGAACCACCAACTGAATCAGAGATAAGCATTGATTGTGATTGCAGTTTTGATACGGTCTGTCATGTTGTGAAGATGACTCTCAAACGCCTTAGTCTACGTGGCATACTCCCACCTCAACTGGCTAAGCTACCTTTTCTCCAAGAAGTAGATTTTGCATACAATTGCTTCACTGGTTCTATTCCAAAGGAATGGGCTTCAATGAAATTAGCTTCAATCTCTCTTGTTGTGAACCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATATTACAACTCTCACATACCTGATGCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCACCTGATCTTGGGAGACTAATAAACTTGCAGACCTTGGTGCTGTCATCCAATCAATTGATAGGGAACTTACCACTTTCACTTGCTGGACTACAAAATTTGACTGACTTTAGAATAAATAATAACAATTTTACCGGAACCATACCTAATTTCATACAGAACTGGCCACTTCTTCAAAGACTAGAAATGCAAGCAAGTGGACTCGAGGGACCCTTTCCATCAAATATCTCTCTCTTAGGGAACTTAGCTCAGTTAAGAATCAGTGATATAAATAGTCCTAGACAGGACTTTCCTTTTCTGGGGAACATGGCAAGCTTGACTACATTGGTTTTAAGGAATTGTAACTTATCTGGTGCGATACCTCCATACATCTGGACGATGATGAATTTGGTAATTTTGGATGTCAGTTTTAACATGCTCGTCGGGGAAATTCCAACAATCATAAGTGCAAGGCGTATAAGATTTATCTACCTGACAGGTAATATGCTTAGTGGCAATATACCAAATTCAATCCTGAAGGATGGAAGTAGCATTGATCTTTCATACAACAACTTTACTTGGCAAGACAATGAGCAACCTGCTTGTCAGGACGGCATTAGGAACTTGAATCTGAATTTGTTCAGAAGCTCGATTAAGGAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAGTTTCACCTGTCCACGGTATTCAAGTTGCTTGCACGTTAATTGTGGCGGGAAGGATCTAAATGTAAAAGATGACAAAGGAGAAAACCTTTATGTGGGAGATATAGATGTTCCAGGTGGCACTGCAACTTATTTCTATAGTGACAATGATAACTGGGGATTTAGTAGCACTGGAGACTTCATGGATGATTATGAAGCCCAGAACATACGTTACACTGTATCTTTACCATCTTCAAATATGCCTGAACTATATAAAACAGCACGTGTATCTCCAATTACCCTTACTTATTTCCATAATTGCATGGAAAATGGGAACTATACCGTAAATCTCCACTTTGCTGAGATACAGTTTACAAATGATAAAACATACAAAAGTCTTGGGACGCGCATATTTGATATCTATGTTCAGGGAAAACTGATTCGCAAAAATTTTAATATTGAGAATGAGACGAATGTTGCTGAAAAACCATTAGTACTGCCTTTATACAATATCAGCATCACAAATAATGTCTTGGAGATTCGGTTCTACTGGGCTGGAAAAGGAACAACTAGAATTCCTGATGCTGGAGTTTATGGTCCCCTTGTATCAGCTATTTCTGTGGTTTCAAATTCTAGAGTTTGCTCAAGTGGAGAAAAAAAGGTTTCTGTTTCTATAATCATTGCAATTGTAGCTGGTGCTCTATGCTTAGTGCTATTTATATCTGGATTCATTTGGTGGAAGTGGAAAGGCTTTTTCAGAGGGAAGCTACAGAGGAATGAAGGGACAAAAGATGGAGATACTCAGGCAGGTAATTTTAGCTTGGAGCAGATCAGAGCTGCCACTAATGACTTCTCTTCTGCTAATAAGATTGGGGAAGGCGGTTTTGGTCCTGTATACAAGGGTCAATTGCTAGATGGTACTTTCATAGCAGTCAAGCAACTGTCATCAAAATCACGGCAGGGAAATCGAGAATTTATAAATGAAATAGGCTTGATATCTTGTGTGCAACATCCCAACCTTGTAAAGCTGCATGGATACTGTGCTGAAGGGGAACAACTTTTGTTGGTATATGAGTACTTGGAAAATAACAGTCTTGCCCGAGCTTTATTTGGTAGAGAAAACTATCAGCTTAAATTGGACTGGCCCACAAGATTTAGGATTTGCATTGGTATAGCAAAAGGTTTAGCATTTCTTCACGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATAGCAAATTGATTCCAAAGATATCTGACTTTGGCTTGGCGAAGCTAGATGAAACAGAGAAGACCCATATCAGCACCCGAGTAGCTGGGACTATAGGATATATGGCACCAGAATATGCCTTATGGGGCTACCTTACACCCAAGGCTGATGTTTACAGTTTTGGAGTGGTGGCATTAGAAGTTATTAGTGGGAAGAGCAATAACAATTATTTACCAGATGATGGAAGTGTTTGTCTTTTGGATTTGGCATGTCACTTAAATCAAGCTCAGAACTTGGTGGGGCTGATTGATGAAAGGTTGGGATCAGATCTTAACAAAAAGGAAGTAGAAAAGGTGGTCAAAGTAGCCCTCCTGTGCACAAATGCTTCTCCATCACTTAGGCCTACAATGTCTGAGGTGGTGAATATGCTTGAAGGACACACAGATATTCCTGATACAATCCCAGATCCAAGTACCTACAATGACGATTTAAGGTTTAAAGCCTTAAGAGACCTACATCAATATCGGTCAAATCAGAGTTTGGGTGGAAATCAGAGCCAGGATTCAATGACACATACATTCAGCTCAGCATCTGGTGGTAATACTCACACTACAAGTTATATTGAGGATCATAGTTCAGTTGACAATAATTAG 3048 0.396 MGVANFFAFLFIALSCFQLLRISESKLPQEEVDALQEIISTMGSAYWKFDADSCKIEMVGLTREPPTESEISIDCDCSFDTVCHVVKMTLKRLSLRGILPPQLAKLPFLQEVDFAYNCFTGSIPKEWASMKLASISLVVNRLSGEIPKHLGNITTLTYLMLEANQFSGVVPPDLGRLINLQTLVLSSNQLIGNLPLSLAGLQNLTDFRINNNNFTGTIPNFIQNWPLLQRLEMQASGLEGPFPSNISLLGNLAQLRISDINSPRQDFPFLGNMASLTTLVLRNCNLSGAIPPYIWTMMNLVILDVSFNMLVGEIPTIISARRIRFIYLTGNMLSGNIPNSILKDGSSIDLSYNNFTWQDNEQPACQDGIRNLNLNLFRSSIKENKLEEYVPCSKSFTCPRYSSCLHVNCGGKDLNVKDDKGENLYVGDIDVPGGTATYFYSDNDNWGFSSTGDFMDDYEAQNIRYTVSLPSSNMPELYKTARVSPITLTYFHNCMENGNYTVNLHFAEIQFTNDKTYKSLGTRIFDIYVQGKLIRKNFNIENETNVAEKPLVLPLYNISITNNVLEIRFYWAGKGTTRIPDAGVYGPLVSAISVVSNSRVCSSGEKKVSVSIIIAIVAGALCLVLFISGFIWWKWKGFFRGKLQRNEGTKDGDTQAGNFSLEQIRAATNDFSSANKIGEGGFGPVYKGQLLDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYLENNSLARALFGRENYQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDSKLIPKISDFGLAKLDETEKTHISTRVAGTIGYMAPEYALWGYLTPKADVYSFGVVALEVISGKSNNNYLPDDGSVCLLDLACHLNQAQNLVGLIDERLGSDLNKKEVEKVVKVALLCTNASPSLRPTMSEVVNMLEGHTDIPDTIPDPSTYNDDLRFKALRDLHQYRSNQSLGGNQSQDSMTHTFSSASGGNTHTTSYIEDHSSVDNN 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02316 1015 Pfam Malectin domain 404 592 IPR021720 -
Cca08g02316 1015 Pfam Protein tyrosine and serine/threonine kinase 674 942 IPR001245 GO:0004672|GO:0006468
Cca08g02316 1015 ProSiteProfiles Protein kinase domain profile. 671 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02316 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Cca08g02316 1015 CDD STKc_IRAK 677 944 - -
Cca08g02316 1015 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 64 987 - -
Cca08g02316 1015 SUPERFAMILY Protein kinase-like (PK-like) 656 960 IPR011009 -
Cca08g02316 1015 MobiDBLite consensus disorder prediction 976 1015 - -
Cca08g02316 1015 SUPERFAMILY L domain-like 76 340 - -
Cca08g02316 1015 Gene3D Ribonuclease Inhibitor 196 396 IPR032675 -
Cca08g02316 1015 Gene3D - 402 599 - -
Cca08g02316 1015 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Cca08g02316 1015 Gene3D Phosphorylase Kinase; domain 1 640 746 - -
Cca08g02316 1015 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 64 987 - -
Cca08g02316 1015 SMART serkin_6 671 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02316 1015 Gene3D Transferase(Phosphotransferase) domain 1 747 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02316 Cca-Chr8 56895370 56905824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02316 5 837 Receptor kinase-like Gene Family AT1G29750 58.802 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca08g02316 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02316 - - qsu:111995633 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02316 08 56895370 56905824 Cca08g02316 08 56895370 56905824 ECH
Cca09g01951 09 44474637 44492983 Cca08g02316 08 56895370 56905824 PCT