Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02312 ATGGCAGCCAAAAAAGCAAAGGCTATTGGCATTGACTTGGGCACAACTTACAGCTGCGTGGCAGTGTGGCAACACAACCACGTCGAGGTCCTTCCCAACGACCAAGGTAACCGCATAACCCCTTCTTACGTTGCTTTCACCGAAACCCAAAGATTATTGGGTGACGCCGCCATGAACCAGCGATCCATGAATCCACACAACACCGTCTTCGACgccaaacgtttgattggtcgcagattctccgaccaatccgttcagcaagacatgaagctgtggccttttaaggttgtccctgccaacagagacaaacccatgattgcagtcacctacaaaggcgaagagaaacaccttgcagctgaagagatatcttccatggtgctgtttaagatgaaggaggttgctgaAACCTATTTGGGTAACATGGTGAAAGATGCAGTTATCACTGTCCCTGCTTACTTCGGCAACGCGCAGAGACAAGCCACGAAGGATGCTGGAAAAATCGCGGGTTTGAATGTGTTGAGGATCATCAACGAGCCAACCGCAGCTGCTATTGCTTATGGTTTGGACAAGAAAGGGTGGAGAGAAGGTGAACAGAACGTGCTCGTGTTTGACCTCGGTGGTGGCACTTTCGATGTTTCCTTGGTGACAATTGATGAAGGCATGTTTAAGGTTAAGGCCATTGTGGGAGACACCCATTTGGGTGGTGTTGACTTTGATAACAAATTGGTGAACCATCTTGTGAATGTGTTTAGAGAGAAGCACAAGAAGGATATCAGTGAGAACGCCAAAGCTCTTGGAAGGTTGAGGTCAGCGTGCGAGAGAGCTAAGAGGAATTTGTCTTCGACTTCGCAGACCGCGATTGAGCTTGATTGTTTATACGAAGGGCTTGATCTATATGCCACTGTTACAAGGGCCTTTTTCGAAGAATTGAACAAGGATTTGTTCGCCAAGTGTATGGAAATAGTAGAAAAGTGCCTCGTTGAGGCAAGGATTGATAAGATCCAAGTTCATGAGATTGTTCTCGTGGGTGGATCTACTAGAATTCCTAAGGTACAACAACTTTTGAAGGACATGTTCAGTGTGAATGGTAACGTGAAAGAGCTTTGCAAAAGCGTCAACCCCGATGAGGCCGTGGCGTATGGTGCTGCAGTTCAAGCAGCGATTTTGAGCTGTGAAGGAGAGAAGAAAGTGGAGGAATTGTTGTTGCTGGATGTGATGCCGATTAGTCTTGGAGTTGAATCGGGTGGGGGTGCCATGTCAGTGTTGATCCCAAAGAACACCACGATCCCCACGAAGAAGGAAACAGTTTGTACTACCTTCTACGACAATCAGAAAACCGTTACGGTGAAAGTGTTCGCGGGAGAACAAGTTAAGACAAAAGATAACGTTTTTGTCGGGCAGTTTGTCCTCTCGGGGTTCGCTCCATCCCCAAAGGGAGTCCCACAGATCAACGTTAGCTTCGATGTAGATGTTGACGGTATTGTGGAGGTGAGCGAAGTGGATAAAACAACAGGGTTGAGAAAGAAGATGACGATGAACAAGAAGCAGGGAGGGGTGAAGCATGAAGAGATGAGAAGAATGGTGAGGGATTCGAAGAAGTACAAGGCAGAGGATGAGGTGGGAAAGAGGAAAGTGAAGGCAAAGAACTCGCTTGAGAATTACGCTTATGAGATGAGGCAGAGAGCGAAGAAGATTGAGGAGGCAGTGGAGGAAACCATAGAGTGGCTAGAGAGAAACCAATTGGCGGAGGTAGAGGAATTTGAGTACAAGAAGCAAGAGTTGGGAAGGTATCTGCGAGATGATCCAAATTGTTATTCCAATGCCTCAACTTCTGAGGTGAAGGTTCCTATATGGTGCACGTGGAGATGTCCACCTAATGGGTGGGTTTGTCTGAACACGGATGGGTCGGTGTACGAGGATCATCGAATTGGTTGTAGCAAGGGTGCCTGTGGGGGTCTAGTTCGGGATTCCTCAGGATGTTTTCTGGGTGGATTTAGTGTTAACTTAGGTCCCACATCGGTTACGTTAGCGGAGTTGTGGGGGGTTGTCCACGGGCTGAAGCTGGCGTGGGATCTTGGATTTAAGAAGGTGAAGGTGGATATTGATTCTGGTAATGCACTTGGTGCTGTTAGGAATCGCCCAGGGGCTAAAGAGCCAACTTTTGCGTTGGTTGCGGAGATCAATGGCCTTGTTCGGAAAGATTGGTTGGTGGAATTCTCGCACGTGTTCAGAGAATCCAATCGTGCGGCGGATCGTTTGGCTCGCTTGGGACACTCTCAGTCTCAGTGTTTGGAATGGGGTGCCAAACGCTTCACAGACCCACCCTCTGCGCTTGTTGATATTCTTCGAGATGACTTGGATGGTGTTGCAAAGGAACGTGGCGTTTCCTAG 2391 0.4425 MAAKKAKAIGIDLGTTYSCVAVWQHNHVEVLPNDQGNRITPSYVAFTETQRLLGDAAMNQRSMNPHNTVFDAKRLIGRRFSDQSVQQDMKLWPFKVVPANRDKPMIAVTYKGEEKHLAAEEISSMVLFKMKEVAETYLGNMVKDAVITVPAYFGNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLDKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFKVKAIVGDTHLGGVDFDNKLVNHLVNVFREKHKKDISENAKALGRLRSACERAKRNLSSTSQTAIELDCLYEGLDLYATVTRAFFEELNKDLFAKCMEIVEKCLVEARIDKIQVHEIVLVGGSTRIPKVQQLLKDMFSVNGNVKELCKSVNPDEAVAYGAAVQAAILSCEGEKKVEELLLLDVMPISLGVESGGGAMSVLIPKNTTIPTKKETVCTTFYDNQKTVTVKVFAGEQVKTKDNVFVGQFVLSGFAPSPKGVPQINVSFDVDVDGIVEVSEVDKTTGLRKKMTMNKKQGGVKHEEMRRMVRDSKKYKAEDEVGKRKVKAKNSLENYAYEMRQRAKKIEEAVEETIEWLERNQLAEVEEFEYKKQELGRYLRDDPNCYSNASTSEVKVPIWCTWRCPPNGWVCLNTDGSVYEDHRIGCSKGACGGLVRDSSGCFLGGFSVNLGPTSVTLAELWGVVHGLKLAWDLGFKKVKVDIDSGNALGAVRNRPGAKEPTFALVAEINGLVRKDWLVEFSHVFRESNRAADRLARLGHSQSQCLEWGAKRFTDPPSALVDILRDDLDGVAKERGVS 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02312 796 Gene3D - 191 369 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 7 20 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 35 47 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 57 65 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 145 165 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 208 218 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 372 392 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 399 418 - -
Cca08g02312 796 PRINTS 70kDa heat shock protein signature 480 496 - -
Cca08g02312 796 Gene3D - 70 125 - -
Cca08g02312 796 ProSiteProfiles RNase H type-1 domain profile. 625 759 IPR002156 GO:0003676|GO:0004523
Cca08g02312 796 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 552 IPR029047 -
Cca08g02312 796 SUPERFAMILY Ribonuclease H-like 627 762 IPR012337 -
Cca08g02312 796 Gene3D - 9 387 - -
Cca08g02312 796 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 4 595 - -
Cca08g02312 796 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cca08g02312 796 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Cca08g02312 796 Gene3D - 628 759 IPR036397 GO:0003676
Cca08g02312 796 CDD RNase_H_like 631 755 IPR044730 -
Cca08g02312 796 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 547 596 IPR029048 -
Cca08g02312 796 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 547 IPR029047 -
Cca08g02312 796 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Cca08g02312 796 SUPERFAMILY Actin-like ATPase domain 195 390 IPR043129 -
Cca08g02312 796 Pfam Reverse transcriptase-like 646 755 IPR002156 GO:0003676|GO:0004523
Cca08g02312 796 Gene3D Actin; Chain A, domain 4 234 317 - -
Cca08g02312 796 Gene3D - 548 600 IPR029048 -
Cca08g02312 796 PANTHER HEAT SHOCK PROTEIN 70KDA 4 595 IPR013126 GO:0005524|GO:0140662
Cca08g02312 796 Coils Coil 559 579 - -
Cca08g02312 796 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Cca08g02312 796 Pfam Hsp70 protein 8 596 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02312 Cca-Chr8 56878994 56881913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02312 1 594 Calmodulin-binding Proteins AT1G16030 66.118 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02312 K03283 - gmx:100795699 1316.98