Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02310 ATGGCAACCAAGAAAGTAAAAGCCATAGGCATTGACTTGGGCACAACCTACAGCTGCGTGGCAGTGTGGCAACACAACCACGTCGAGGTCATTCCCAACGACCAAGGCAACCGCACCACCCCTTCTTACGTTGCCTTCACCGACACTCAGAGGTTGTTGGGTGACGCTGCCATGAACCAACGGACCACGAATCCACACAACACCGTCTTCGACAccaaacgtttgatcggtcgtagattctccgaccaatctgttcagcaagacatgaagctgtggccctttaaggttgtccctggaaacagagacaagcccatgattgctGCCACGGTGGGAGACACGCACTTGGGTGGTGTGGACTTTGATAACAAATTGGTTGACTATCTTGTGAGTATATTCAAGAGGAGGTACCAAATTGATGTTAGTGGGAACGCTAAAGCTCTTGGAAGGTTGAGGTCAGCGTGTGAGAAAGCTAAGAGGATTCTGTCCTCCAGTTCTCAAACCACTATTGAGCTTGACTCTTTATGTGGAGGG 531 0.4011 MATKKVKAIGIDLGTTYSCVAVWQHNHVEVIPNDQGNRTTPSYVAFTDTQRLLGDAAMNQRTTNPHNTVFDTKRLIGRRFSDQSVQQDMKLWPFKVVPGNRDKPMIAATVGDTHLGGVDFDNKLVDYLVSIFKRRYQIDVSGNAKALGRLRSACEKAKRILSSSSQTTIELDSLCGG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02310 177 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 107 176 - -
Cca08g02310 177 PANTHER HEAT SHOCK PROTEIN 70KDA 107 176 IPR013126 GO:0005524|GO:0140662
Cca08g02310 177 SUPERFAMILY Actin-like ATPase domain 106 175 IPR043129 -
Cca08g02310 177 Pfam Hsp70 protein 8 109 IPR013126 GO:0005524|GO:0140662
Cca08g02310 177 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cca08g02310 177 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 5 107 - -
Cca08g02310 177 SUPERFAMILY Actin-like ATPase domain 8 111 IPR043129 -
Cca08g02310 177 Gene3D - 9 69 - -
Cca08g02310 177 PANTHER HEAT SHOCK PROTEIN 70KDA 5 107 IPR013126 GO:0005524|GO:0140662
Cca08g02310 177 Gene3D - 70 105 - -
Cca08g02310 177 PRINTS 70kDa heat shock protein signature 57 65 - -
Cca08g02310 177 PRINTS 70kDa heat shock protein signature 35 47 - -
Cca08g02310 177 PRINTS 70kDa heat shock protein signature 7 20 - -
Cca08g02310 177 Gene3D - 106 115 - -
Cca08g02310 177 Gene3D Actin; Chain A, domain 4 116 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02310 Cca-Chr8 56858886 56859770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02310 106 177 Calmodulin-binding Proteins AT1G56410 61.111 1.19e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02310 K03283 - gmx:121173324 208.764