Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02304 ATGGAGTCGAAAAACCCCGCGAGGTTTACGCTGGGGAAGCAGTCGTCGCTGGCACCGGAACGCCGCAACGAGGAAGCGGAGCATCAGAATGAGGGAGACGCCGTTGACCAGAGCGTGAGGTTGATGTATTCGGCGTTCGAAGGCGATGTGGATGGTATTCGCGAGGTGTTGGAGTCTGGTGTTAATGTCAATTTCAGGGATATTGATTATCGCACTGCTCTTCATGTTGCCGCGTGTGAGGGATTCACTGAGGTCGTTGAGTTTTTGCTCCAGAAAGGTGCCGAAGTTGACGCCAAGGATCGATGGGGAAGCACGCCACTTGCTGATGCTATTTTTTATAAAAAAAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCTCTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAGTATGAAATCAATCCTAAAGAGCTTGATTTTACTAATAGTGTGGAGATATCGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTACTTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTCCGTGATTTCATGCAAAGAAAAGGAGCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTACACGAAAATAAGCCATCACCAATTATTCACCGCGATCTTGAGCCTTCTAATATATTGCGGGATGATTCTGGACACCTAAAAGTTGCAGACTTTGGGGTCAGCAAGTTGCTGGCAGTTAAAGAAGATAGACCTCTTACTTGCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAAGTTTTTAAACAAGAGGAATATGACACTAAAGTGGATGTATTTTCATTTGCACTAATTCTACAAGAGATGATTGAAGGTTGCCCTCCTTTTTCTGCCAAGCAAGAAGATGAAGTTCCTAAGGTATATGCTGCAAAAGAGCGACCACCTTTCCGAGCTCCAGCCAAGCGTTATTCCCATGGAATTCGAGAATTGATCGAAGAGTGCTGGAATGAGAATCCAGCTAAGAGGCCAACATTTAGGCAAATAATAACAAGGCTAGAGTCCATCTACAACGCAATTGGTCAAAAAAGACGTTGGAAGGTTATCATCTCTCTTACATTGCCCCTTTTCCTGCATCAGATATGCTTGTTCAAAACTGTGTTGACTGGAATGAATGCTTAA 1344 0.4501 MESKNPARFTLGKQSSLAPERRNEEAEHQNEGDAVDQSVRLMYSAFEGDVDGIREVLESGVNVNFRDIDYRTALHVAACEGFTEVVEFLLQKGAEVDAKDRWGSTPLADAIFYKKNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPKELDFTNSVEISKGTFCSALWRGTEVAVKKLGEDVLSDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFMQRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKQEDEVPKVYAAKERPPFRAPAKRYSHGIRELIEECWNENPAKRPTFRQIITRLESIYNAIGQKRRWKVIISLTLPLFLHQICLFKTVLTGMNA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02304 447 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Cca08g02304 447 CDD STKc_MAP3K-like 160 407 - -
Cca08g02304 447 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Cca08g02304 447 Gene3D Transferase(Phosphotransferase) domain 1 230 423 - -
Cca08g02304 447 PIRSF ILK 1 428 - -
Cca08g02304 447 Gene3D - 6 145 IPR036770 -
Cca08g02304 447 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 424 - -
Cca08g02304 447 MobiDBLite consensus disorder prediction 18 34 - -
Cca08g02304 447 ProSiteProfiles Protein kinase domain profile. 154 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02304 447 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Cca08g02304 447 Pfam Protein tyrosine and serine/threonine kinase 171 407 IPR001245 GO:0004672|GO:0006468
Cca08g02304 447 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Cca08g02304 447 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 424 - -
Cca08g02304 447 SUPERFAMILY Ankyrin repeat 40 131 IPR036770 -
Cca08g02304 447 SUPERFAMILY Protein kinase-like (PK-like) 153 408 IPR011009 -
Cca08g02304 447 SMART ANK_2a 36 65 IPR002110 GO:0005515
Cca08g02304 447 SMART ANK_2a 69 98 IPR002110 GO:0005515
Cca08g02304 447 SMART ANK_2a 102 131 IPR002110 GO:0005515
Cca08g02304 447 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02304 Cca-Chr8 56800164 56808384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02304 8 428 MAP Kinase Kinase Kinase AT4G18950 68.310 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Cca08g02304 PK_Tyr_Ser-Thr 1.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02304 - - gmx:100790126 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02304 08 56800164 56808384 Cca08g02304 08 56800164 56808384 ECH