Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02303 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGAGGAAGatgggaagggggaagattgagatcaagaggattgagaacaccaccaatcgccaagtcaccttctgcaagcgtagaaatgggttgctcaagaaagcatatgagttatctgtgctttgtgatgcagaggttgctttaatagtcttctctagccgtggtcgcctctatgaatATGCTAATAACAGCGTCAAAGCAACGATTGAGAGGTACAAAAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGGTTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATTAGTAACCTGCAGAATAACAACAGGCAAGTTGAATTGCAAATGATGGGTGAGTCATTGGGCTCTATGAGTGCCAAGGAACTCAAAAACTTGGAGACTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAAAGGAGCCACCATAACATGGGTGTGTTGCCTGGAGACACAAACTATGACTCTATGCAGTCTCAGCAGCAATTTGACTCTCGTGGCTATTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCACGTCAAGATCAGATGTCCCTTCAATTAGTATGA 741 0.3212 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEVNAQFYQQEADKLRAQISNLQNNNRQVELQMMGESLGSMSAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHHNMGVLPGDTNYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02303 246 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Cca08g02303 246 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Cca08g02303 246 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Cca08g02303 246 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Cca08g02303 246 PANTHER MADS BOX PROTEIN 10 240 - -
Cca08g02303 246 ProSiteProfiles K-box domain profile. 102 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g02303 246 Coils Coil 102 129 - -
Cca08g02303 246 Coils Coil 143 163 - -
Cca08g02303 246 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Cca08g02303 246 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Cca08g02303 246 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Cca08g02303 246 Pfam K-box region 101 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca08g02303 246 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Cca08g02303 246 PANTHER AGAMOUSB 10 240 - -
Cca08g02303 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Cca08g02303 246 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02303 Cca-Chr8 56743444 56752248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02303 14 246 MADS-box Gene Family AT3G58780 66.527 1.77e-106 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca08g02303 K-box 8.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02303 K09264 - gmx:732595 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02303 08 56743444 56752248 Cca08g02303 08 56743444 56752248 ECH
Cca09g01959 09 44574216 44581461 Cca08g02303 08 56743444 56752248 PCT