Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02286 ATGGAGCAAGAAGAGGAACAATGTAAAGAACAAAAGGCCAATGTGAATGATGAAAAAGTCCCATTTTACAAGCTTTTTGCCTTTGCAGATGGCCTTGATGTGACTTTGATGATTGTTGGCTGCATTTCCGCCATGGCTAATGGGTTGGCACAACCTCTCATGACCCTCATTTTTGGGAAGGTCATCAACGCTTTTGGAAGCACCGATCCATCCCTCATAGTCAATGAAGTTTCCAAGGTTGTAATATTTTTTGTTTACTTGGCTGTTGGGGCTGGAGTTGCCTCGTTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCTCAAGAATCCGTGCTTTGTACTTAAAGACTATATTGAAGCAGGACATTAGCTTCTTTGACACTGAAACAACAACTGGTGAGGTAATTGGGAGGATATCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGTTACAACCTTTTTTGGTGGCTTTGTGATTGCCTTTACAAAAGGCTGGCAACTCTGTCTAGTTTTGATTGCATGCATTCCTTGTATGGTTATTGCTGGTGGAATTATGTCCATCATGGTGGCGAAAGTTTCAATTCGTGGGCAAGTTGCTTATACAGAAGCCGGAAACGTTGTACAACAAACAGTTGGGGCAATTAAAACAGTTGCCTCTTTTACCGGCGAGAAAAAAGCAATAGAAAATTATAATGACAAGTTAAGAACATCTTACTTTGCAACTGTTCAGCAAGGGTTTGCCTCAGGGTTTGGAATGGGAGTACTGTTGTTGATTGTATTTTGCACCTATGCACTTGCCATGTGGTATGGTTCCAAAATGATCCTTGAGCGAGGCTATAATGGTGGAAGCGTTTTCAATATAATCATATCCATCAATACTGGTTCAATGTCACTTGGTCAGGCGGCCCCATGCATAAGTGCATTTGCATCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAGAGAAAACCGAAAATTGATGCTTCTGACACCAATGGTGTTGTTTTGGAAGACATGAAGGGAGATATTGAACTCAAGGATGTTCACTTTAGATACCCTGCAAGGCCAGATATTCAAATATTTTCCGGATTCTCATTCAATATTCCCAATGGTAAAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGCAAGTCAACTATAATTAGTTTGTTAGAAAGATTTTATGATCCTGATGCTGGAGAGGTACTTATAGATGGCATTAATTTGAAGAGTTTTCAAGTTAGATGGATTAGAGGACAAATTGGGCTTGTTGGTCAAGAACCTGTCCTGTTCACTGGTAGTATCAAAGAGAACATAGCATACGGTAAAGAAGATGCAACAGATGAGGAGATAACAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGATAAGCTGCCTGAGGGCATTGACACAGTGATGGGAGGGCAAGGAACTGCACTTTCTGGTGGACAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAAAATCCTTCTTCTTGATGAAGCTACTAGTGCTTTGGATGCCGAGTCTGAACACATTGTTCAAGAAGCATTACAGAAAGTTATGTCACACAGGACAACTGTAGTTGTTGCACATCGTTTGACGACTATTAGATATGCTGACATCATAGCAGTGGTTCATCAGGGCAAGATTGTAGAAAAGGGAACTCATGACGAGTTAATCAAGGATGATGATGGTGCTTATTCACAGCTTATTCGTTTGCAAGAAGGAAATAGAGAATCAGATAAGTCAAATAACAACAATGTCAACTTAGATAGTCATATGGCTAGATCTTCCACTCAGGGGACATCCTTTGCGAGATCATCAAGTCAAGGCTCATCAGGCAGTCACTCTTTCTCACTTACCTCTCCTCTTCCTTATCAACTTTCTATACGTGAGTCTGAAGAAGGAGCAAATAGGGATGTTGAAAGGAGTGAAGTTGAAAATGTGAAGCACCAAAATGTTTCTATTCAACGTTTGGCCAAGTTGAACAAGCCAGAGATTCCTATCTTACTACTAGGATCTATTGCTGCAGCAGTGAATGGTGTCACTCTCCCTGTATTTGGCCTCTTGCTTTCATCAGCTATTAACACATTCTATGAACCTCCATATCAACTTAAGAAGGATTCCGAGTTTTGGTCAATGCTATTTGTTGTTCTGGGGCTTGTCGCTGTGGTAGCTATACCATTACAAAACTACTCATTTGGGGTAGCTGGAGGAAAACTTGTAGAAAGAATTCGTTCATTGACATTTAAAAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATCGCCCTTCCAATTCAAGTGGTGCTGTTAGTGCAAGGTTAGCTGCTGATGCTTCAACTATAAGGAGTCTTGTGGGTGACAGCTTGGCCCTTATTATGCAAAACATTGCAACAGTCGCATCTGGTCTAATCATAGCATTCACTGCTAACTGGATTCTGGCTTTTGTGGTTTTGGCTGTGTCACCCTTGTTGCTCATGCAAGGATACTTTCAAACCAAGTTTTTAAAAGGATTCAGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGTAAATGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTTTGTGCTGAACCAAAGGTGATGGATAAGTACATCAAAAAATGTTCAGAGCCAGTAAAACAAGGTGTTCGGTTGGGGATTGTTAGTGGTGGAGGTCTAGGTTTCTCTTTTTTGGCTCTCTATTGCACAAATGCTTTTGTTTTCTACATAGGAGCTATTCTTGTGCAACACGGGAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTCGGTGTTTCCCAAACTAGTGCCTTGGCACCAGATACTAACAAGGCCAAAGATTCTGCAGCTTCAATATTTGAAATTCTTGACAGCAAACCCACGATTGACTCGAGCAGTGATGAGGGAACAACACTAGACACCGTAAAAGGAGACATTGAATTTCAACAAGTCAGCTTTTGTTACCCAACAAGGCCCGATATTCAAATTTTCAAAGATTTTTGTCTAAGCATGCCGGCTGGAAAGACCATTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTAATAAGCCTCTTGGAGAGATTTTACAACCCTGATTCTGGACACGTGCTACTTGATGGAGTGAATATCAAAAAGTTAAAACTAAGCTGGCTGAGGCAGCAAATGGGATTGGTTGGACAAGAGCCAATTCTTTTCAATGAAAGCATTCGTTCCAACATAGCTTATGGGAAAGAGGGAGGGGCAACGGAGGAAGAGATAATTGCAGCAGCACAAGCAGCAAATGCACACAAGTTCATAAGTTCTCTTCCACATGGTTATGACACTTCCGTTGGGGAAAGAGGCACACAGTTATCAGGTGGACAAAAGCAACGCATCGCCATTGCAAGAGCCATTCTCAAAGACCCTAGAATACTTTTGCTGGATGAGGCAACTAGTGCACTTGATGCAGAATCAGAGCGTGTTGTGCAAGAGGCTCTAGACAGAGTCAGTGTCAATAGGACCACTGTTGTCATAGCTCACCGTCTTACAACAATTAAAGGTGCTCATATTATAGCAGTTATGAAAAATGGGGCCGTTGGTGAAAAAGGAGAACATGATGAGTTGATGAAGATTGATGGTGGACTCTATGCTTCATTGACCTCGGCCTCATCACTGTCCAGTAGAGGTCTCAGCTCGGGTTCACCCCATCAACGGCCTAAGCATAATAACCATTCATCCGAGGTCTCGGCCAACATCTTGGCCAGATTCATCATTACTGCCACTCATTTCTCAGATGCAACCTCTGGCCATGCACTTCCTACCATCAACATGAAAAATTTGATCCACGGAGAAGATAAAGAACTCGAGCTAGAGAAGTTGAACTCAGCTTGTAAAGATTGGGGTTTCTTCCAGTTGGTGGAGCATGGAATAAGCCCACTAGTGCTGGAAACGCTTAAAGAAGAAGTTGAAGGATTCTTCAGGCTGCCCTTGGAAGAAAAGATGAAATACAAAGTGAGGCCAGGTGATGTTGAAGGCTACGGAACTGTGATTAGATCAGAGGATCAAAAACTTGACTGGGGCGATAGGTTATTCATGAAAATCAACCCTCTTGACATGAGAAAACCATATCTTCTCCCACAACTCCCCTCATCACTCAGGAGTATCTTAGAATTGTACATTGAGGAATTGCAAAGTCTTGGGATGATGCTTGTGGGGTTGGTGGGGAAAGCAATAAAGATGGAGAAGAGAGAGTGGGAGGTGTTTGAGGATGGGATACAGAATGTGAGGATGACATACTACCCTCCATGCCCAGAACCAGAGTTAGTTATGGGTCTCACTGCACATTCTGATGCAGCAGGAATCACCATACTGAATCAAATGAATGGAGTGAATGGACTGCAGGTTAAGAAAGATGGGATTTGGATTCCAGTCAACGTTATCTCAGAAGCCTTTGTTGTTAACATCGGAGATATTCTAGAGGTTTCAATCATCTCTCCCTCCTTATTATAG 4602 0.4209 MEQEEEQCKEQKANVNDEKVPFYKLFAFADGLDVTLMIVGCISAMANGLAQPLMTLIFGKVINAFGSTDPSLIVNEVSKVVIFFVYLAVGAGVASFLQVSCWMVTGERQASRIRALYLKTILKQDISFFDTETTTGEVIGRISGDTILIQDAMGEKVGKFIQLVTTFFGGFVIAFTKGWQLCLVLIACIPCMVIAGGIMSIMVAKVSIRGQVAYTEAGNVVQQTVGAIKTVASFTGEKKAIENYNDKLRTSYFATVQQGFASGFGMGVLLLIVFCTYALAMWYGSKMILERGYNGGSVFNIIISINTGSMSLGQAAPCISAFASGQAAAYKMFETIKRKPKIDASDTNGVVLEDMKGDIELKDVHFRYPARPDIQIFSGFSFNIPNGKTAALVGQSGSGKSTIISLLERFYDPDAGEVLIDGINLKSFQVRWIRGQIGLVGQEPVLFTGSIKENIAYGKEDATDEEITTAITLANAKKFIDKLPEGIDTVMGGQGTALSGGQKQRIAIARAILKNPKILLLDEATSALDAESEHIVQEALQKVMSHRTTVVVAHRLTTIRYADIIAVVHQGKIVEKGTHDELIKDDDGAYSQLIRLQEGNRESDKSNNNNVNLDSHMARSSTQGTSFARSSSQGSSGSHSFSLTSPLPYQLSIRESEEGANRDVERSEVENVKHQNVSIQRLAKLNKPEIPILLLGSIAAAVNGVTLPVFGLLLSSAINTFYEPPYQLKKDSEFWSMLFVVLGLVAVVAIPLQNYSFGVAGGKLVERIRSLTFKKVVHQEISWFDRPSNSSGAVSARLAADASTIRSLVGDSLALIMQNIATVASGLIIAFTANWILAFVVLAVSPLLLMQGYFQTKFLKGFSADAKVKYEEASQVVNDAVGSIRTVASFCAEPKVMDKYIKKCSEPVKQGVRLGIVSGGGLGFSFLALYCTNAFVFYIGAILVQHGKATFGEVFKVFFALTVTAVGVSQTSALAPDTNKAKDSAASIFEILDSKPTIDSSSDEGTTLDTVKGDIEFQQVSFCYPTRPDIQIFKDFCLSMPAGKTIALVGESGSGKSTVISLLERFYNPDSGHVLLDGVNIKKLKLSWLRQQMGLVGQEPILFNESIRSNIAYGKEGGATEEEIIAAAQAANAHKFISSLPHGYDTSVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVSVNRTTVVIAHRLTTIKGAHIIAVMKNGAVGEKGEHDELMKIDGGLYASLTSASSLSSRGLSSGSPHQRPKHNNHSSEVSANILARFIITATHFSDATSGHALPTINMKNLIHGEDKELELEKLNSACKDWGFFQLVEHGISPLVLETLKEEVEGFFRLPLEEKMKYKVRPGDVEGYGTVIRSEDQKLDWGDRLFMKINPLDMRKPYLLPQLPSSLRSILELYIEELQSLGMMLVGLVGKAIKMEKREWEVFEDGIQNVRMTYYPPCPEPELVMGLTAHSDAAGITILNQMNGVNGLQVKKDGIWIPVNVISEAFVVNIGDILEVSIISPSLL 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02286 1533 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 694 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02286 1533 Gene3D - 357 610 IPR027417 -
Cca08g02286 1533 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 14 1251 IPR039421 -
Cca08g02286 1533 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 14 1251 - -
Cca08g02286 1533 MobiDBLite consensus disorder prediction 603 643 - -
Cca08g02286 1533 Gene3D - 1270 1527 IPR027443 -
Cca08g02286 1533 Gene3D - 1005 1259 IPR027417 -
Cca08g02286 1533 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02286 1533 SUPERFAMILY ABC transporter transmembrane region 681 999 IPR036640 GO:0005524|GO:0016021
Cca08g02286 1533 SUPERFAMILY ABC transporter transmembrane region 24 343 IPR036640 GO:0005524|GO:0016021
Cca08g02286 1533 MobiDBLite consensus disorder prediction 596 643 - -
Cca08g02286 1533 CDD ABC_MTABC3_MDL1_MDL2 1015 1247 - -
Cca08g02286 1533 SUPERFAMILY Clavaminate synthase-like 1289 1525 - -
Cca08g02286 1533 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524
Cca08g02286 1533 Pfam 2OG-Fe(II) oxygenase superfamily 1457 1525 IPR044861 -
Cca08g02286 1533 Pfam ABC transporter 379 526 IPR003439 GO:0005524
Cca08g02286 1533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 597 IPR027417 -
Cca08g02286 1533 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1252 IPR003439 GO:0005524
Cca08g02286 1533 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524
Cca08g02286 1533 Pfam non-haem dioxygenase in morphine synthesis N-terminal 1303 1403 IPR026992 -
Cca08g02286 1533 SMART AAA_5 386 572 IPR003593 -
Cca08g02286 1533 SMART AAA_5 1042 1325 IPR003593 -
Cca08g02286 1533 Gene3D ABC transporter type 1, transmembrane domain 82 988 IPR036640 GO:0005524|GO:0016021
Cca08g02286 1533 Pfam ABC transporter 1034 1183 IPR003439 GO:0005524
Cca08g02286 1533 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Cca08g02286 1533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1251 IPR027417 -
Cca08g02286 1533 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 332 - -
Cca08g02286 1533 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Cca08g02286 1533 Pfam ABC transporter transmembrane region 694 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02286 1533 Pfam ABC transporter transmembrane region 37 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02286 1533 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02286 Cca-Chr8 56484228 56494296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02286 20 1265 Calmodulin-binding Proteins AT2G36910 44.347 0.0 1060
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02286 08 56484228 56494296 Cca08g02286 08 56484228 56494296 ECH