Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02278 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTGTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAGCAAGTGGCTGTGTCGACCAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGTGGAGACTGATGAGGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAAGCATACCTGCCGGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTATTTCTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGAGGATTCTCCGTACCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCTTTGGATTTCTCTCAACAGCCACCTGCTCAAGAATTAATTGCAAGGGATTTACATGGCAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTCACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCCGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTGCTTCTGGGCATCCGCCGTGCTAATCGACCACAAACCGTGATGCCTTCTTCTGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTACAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCCAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGCCCAACTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCCCCATTTCCTCTGAGGCTTAAGCGACCATGGCCTCCAGGACTGCCCTCATTCCATGGCATGAAGGATGACGATTTTGGCATGAATTCACCTTTGTTGTGGCTCCGAGACACTGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGGGTTAATCCTTGGATGCAGCCAAGATTTGATCCCTCCATGTTGAATATGCAAACAGATTTGTATCAAgctgcagctgctgctgctgTTCAGGACATGAGGAGTTTAGATCCTTCCAAACAGCATTCTGCTTCCTTGCTTCAATTTCAGCAACCACCGAACTTCCCAAACAGAAATTCTGCTTTAATGCAGGCCCAGTTGTTGCAGCAGCCACAACCTCAGCAAATGTTTGGAAATAATCAAGAGAATCAGCATTCACCACAATCTCAGCCACAAACTCAGGCTCATCTTcagcaacatctacaacatcaacattcattcaatagtcagcatcatcatcaccagcagcagcaacaactacaacagacacagcagcaacagcaacagcaaGTGGTAGATAATCAGCAGATTTCCAGTGCAGTCTCTACAATGTCTCAGTTTGTTTCTGCACCTCAACCTCAATCACCGCCTGTGCAAGCTATCTCTTCCCTGTGCCAACAACAAAATTTTTCTGATACAAATGGAAACCCAGTGACTACTGTTGTTTCTCCCCTGCATAGTATCTTGGGTTCATTTCCCCAGGATGAGACATCTCATCTACTGAACATTTCCAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAAGTGCATGGCCATCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCCCCTCAATGTGTTCTACCTCAGGTGGACCAGCTAGGACAGCCACAGAGTACCATGTCTCAAAATGCTATTTCGTTACCACCTTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCGTCTGTTATTTGGCGTTAATATAGAGCCCTCGTCCCTTCTCATGCCTAATGGGATGTCAAGCCTTAAGGGGGTCAGTGGCAACAACGACTCCTCAACCTTGCCGTATCAATCTTCAAATTATCTGAATACCACTACAGGCACTGATTCTTCATTGAATCATGGAATGACACACAACATAGGCGAATCGGGTTTCCTGCAGAGTCCAGAAAATACTGGACAAGGAAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCAGAGAACTTGCTCGAATGTTTGGCCTTGAAGGCGAGTTAGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAATGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGCAACAGTGGCCTTGAACTGTTGAACTCGGTTCCAATTCAAAAGGCTCTCTAA 2640 0.442 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADVETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGMNSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQTDLYQAAAAAAVQDMRSLDPSKQHSASLLQFQQPPNFPNRNSALMQAQLLQQPQPQQMFGNNQENQHSPQSQPQTQAHLQQHLQHQHSFNSQHHHHQQQQQLQQTQQQQQQQVVDNQQISSAVSTMSQFVSAPQPQSPPVQAISSLCQQQNFSDTNGNPVTTVVSPLHSILGSFPQDETSHLLNISRTSSWIPVQNSSAWPSKRVAVDPLLSSGAPQCVLPQVDQLGQPQSTMSQNAISLPPFPGRECSIDQEGSNDPQNRLLFGVNIEPSSLLMPNGMSSLKGVSGNNDSSTLPYQSSNYLNTTTGTDSSLNHGMTHNIGESGFLQSPENTGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQKAL 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02278 879 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cca08g02278 879 MobiDBLite consensus disorder prediction 491 552 - -
Cca08g02278 879 Pfam AUX/IAA family 767 859 IPR033389 -
Cca08g02278 879 Gene3D - 291 363 - -
Cca08g02278 879 PANTHER AUXIN RESPONSE FACTOR 1 877 - -
Cca08g02278 879 SUPERFAMILY CAD & PB1 domains 773 849 - -
Cca08g02278 879 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cca08g02278 879 Gene3D - 125 228 IPR015300 -
Cca08g02278 879 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cca08g02278 879 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cca08g02278 879 Gene3D - 771 863 - -
Cca08g02278 879 ProSiteProfiles PB1 domain profile. 774 858 IPR000270 GO:0005515
Cca08g02278 879 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 877 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca08g02278 879 SMART B3_2 127 229 IPR003340 GO:0003677
Cca08g02278 879 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02278 Cca-Chr8 56415261 56422657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02278 1 483 B3 DNA Binding Superfamily AT1G30330 87.500 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca08g02278 AUX_IAA 7.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02278 - - gmx:100798719 1526.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02278 08 56415261 56422657 Cca08g02278 08 56415261 56422657 ECH