Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02266 ATGGGGGATTTGGAGCGAATGGGAAGAGAACTGAAATGTCCGATCTGTTGGAGTTTGCTCGATTCCGCGGTTTCGCTTACCTGCAACCATCTTTTCTGCAACTCCTGTATATTCAAGTCCATGAAATCAGCCTCTGCGTGTCCCGTCTGTAAAATTCCTTTCACGCGCCGAGAGGTTCGTCCTGCGCCTCACATGGACAACTTGGTCAGCATATATAAAAACATGGAAGCTGCTTCGGGAATTAATATATTTGTCACCCAGAATGCACCTGTTACTAAATTATCAGATGAAGAAAAGCAATGTGAAGGTGGTGCTGACAACTCTGACAACGTGGAAGCTGGTGAGACTCATAAAAGTCATGCACGGGGGAAGAAAACCGTTAAGAGAAAGAAGTCGAAGACAGTTCAGACCAGCACGGAAGGTTCAGGCTCTGGTTATGACTTTGCAAAACCTTCTTTTCCTGCAAAGAAAAGGGTGCAGGTGCCGCAAAATATTCTTTCAGAAACTCCGTTAAAGAATGTGAAGGTTGGAGACTCTGTTGGTGACATTAACAAAGAGGGAACTGAAAAGGTGTCAGTTATGGAAGATGAAAGGCCTCTCCAAAGTGAAAAATGTGATCCTGTTCTTTCACCATTCTTTTGGTTGAGAGAGGAAAAAGATGGTGAAAAGTTGAGTCAACCAACTGATGAGGATCAAGTTATTGACGGCTTAACACCAAACCCTCCCTCATTCAGTGATCTCAAGGACTCTGATGATGAAAATCCCCCGTCGGATGAGGTGCTAAATAAAAGTGCTGTTAATTTATTTGATAGTGATATGTTTGAATGGACACAGAGGCCTTGCTCTCCTGAATTGTTTTCAAGTCCCTCCAAAATGCAGGTCAAAGATACTTATGAGGATGATGAAAATCAAGAGGAATTGGTGGCTGCCACAATGGAGCTGGATGCAAATCAGGCAAGTGCTGATTCTGACAACATAAAACTTGAGAATCTCAAAGAAGGAAACAGATTGGTTGATGCATTACCACCGAGTATGTCTCCTCCTCACATTAGAAGTATGGATGATCTAAATGGAAAGAAAAGGTCTACAAAAAGAGGCAGAAAGGCTAGGGAAAAAATTAGGCAAGATCAGATTGGGGAACCAAAGAATTCAATTGACAGAATGCATGTTGATTCAAATATATCAATAGAAGTCTCTCATGAACAAGCATTGAACTCTAATCACAAATCTTCTTATTTGGGGAAGGTTACTAGAATGGCCAAGAGGGTTTGTTTCAGTACCAGTTCCATTCCAACACCTATAACTGCTTGTACGGTTCCCAGCACATTAGGAGGTTTAGGCAATAGTGACATGAAGATCGCTAAGAATTCAAATACTTCACTATGTAAACAAGAAAATGAGAAGCAATGTCCTCAGGAGATTGCTCTAAAAGGCCATATGAAGAGGTCTGGAAAACAAAATATTGACCAAACCAATGAGTTTGCTGGTTCTGCTTCATCCATTTTTAGTCTGCAGACAGATCATAATGGGAAGACCTCATCTAATAGAAAGCAAAGCAAAAAGAAGTTTTCCAGAAAATCTATGTCCTGCAGTAAAGAATTCAGAACTACTAAAAAGCCAAAACTTTCCTCTGATTGTATCTCCAAGACTAAAAACGGTGTAGAAATTCTACCTAATGAAAGTATTCATCAAGGTCCGGAAGTTAGGAATTTGAATAATACATCAAAAGAAAAGCATTGTTCTTTGATGGATGAAACATTTTTAAAGAAATGTGGGAGTCATGTAAAAAAGTATCAATGTGTTTTCTGTCACTCATCAGAAGAATCAGAGGTTTCTGGCCCTTTGGTGCATTACCTTGATGGCAAGCCTGTAACTGCAGATTATGAAGAGGGGTCTAAAGTAACTCATTGTCACAGGAACTGCACAGAATGGGCCCCCGATGTATACTTTGATGGTGATGATGCAATAAATCTTGAAGCTGAAATTTGTAGAAGTCGAAGAATTAAATGTAGTTTCTGTGGACTTAAAGGGGCTGCACTTGGTTGTTTTGAGAAAAGTTGTCGCCGGAGCTTTCATGTTCCTTGTGCCAAATGGACTTCTCAATGTCGATGGGATACGCAAAATTTCGTCATGTTATGCCCTCTGCATTCTTCCTCCATGTTGCCCTGTGAAGGTTCTGGATCCCAAAAAAGGAGCAAGAAATGCACAGCTAGAGAGGGAAAAAACCATGGTCCTGAACATGACACTACAAGCCAAAGTCGGACTGCTCATAGATCATACAAGAAAATTGTACTATGTTGTTCTGCTCTATCCGTACAGGAGAGGAAAGTTGTTTCTGAATTTGAAAGAGTATCCAAGGTTACAGTCTTAAAAGATTGGGACTCAAGTGTTACCCATGTTATAGCTTCCACGGATGAAAATGGGGCATGCAAAAGGACCCTCAAGGTATTGTTGGGTATCTTGGAGGGAAAGTGGATTCTCAATATTGAATGGATCAAAGCTTGCTTGAAGGAAAAGGATCCCGTTGATGAAGAGTGGTATGAAATTAATGCTGACATCCATGGAATTAGGGATGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCATCCAAAGCTTTTTGATGGCTACAAGTTTTACTTTATGGGAGATTTTATACCTTCATACAAGGGGTATCTGCAAGAACTTGTGGTTGCTGCTGGAGGGATAATTTTGCACAGAAAACCAGTGTCTGGTGACCAAGAGTCAATGTTACCAGATATGCATCCATACCAAACCGTCATAATTTACAGCCTCGAGATTCCTGATAAATGTAAGCCTTCGAAAGAGGATACAATTTGCAGCCAAAGGCGCCACGTTGCAGAGGTTCTAGCAAGTTCTACAGGTTCAAAGGTAGCAAGTAATACATGGATTCTGAATTCAATTGCAGCCTGCAAACTGCAATGCCTTGGTCAATGA 2961 0.4097 MGDLERMGRELKCPICWSLLDSAVSLTCNHLFCNSCIFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGINIFVTQNAPVTKLSDEEKQCEGGADNSDNVEAGETHKSHARGKKTVKRKKSKTVQTSTEGSGSGYDFAKPSFPAKKRVQVPQNILSETPLKNVKVGDSVGDINKEGTEKVSVMEDERPLQSEKCDPVLSPFFWLREEKDGEKLSQPTDEDQVIDGLTPNPPSFSDLKDSDDENPPSDEVLNKSAVNLFDSDMFEWTQRPCSPELFSSPSKMQVKDTYEDDENQEELVAATMELDANQASADSDNIKLENLKEGNRLVDALPPSMSPPHIRSMDDLNGKKRSTKRGRKAREKIRQDQIGEPKNSIDRMHVDSNISIEVSHEQALNSNHKSSYLGKVTRMAKRVCFSTSSIPTPITACTVPSTLGGLGNSDMKIAKNSNTSLCKQENEKQCPQEIALKGHMKRSGKQNIDQTNEFAGSASSIFSLQTDHNGKTSSNRKQSKKKFSRKSMSCSKEFRTTKKPKLSSDCISKTKNGVEILPNESIHQGPEVRNLNNTSKEKHCSLMDETFLKKCGSHVKKYQCVFCHSSEESEVSGPLVHYLDGKPVTADYEEGSKVTHCHRNCTEWAPDVYFDGDDAINLEAEICRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTSQCRWDTQNFVMLCPLHSSSMLPCEGSGSQKRSKKCTAREGKNHGPEHDTTSQSRTAHRSYKKIVLCCSALSVQERKVVSEFERVSKVTVLKDWDSSVTHVIASTDENGACKRTLKVLLGILEGKWILNIEWIKACLKEKDPVDEEWYEINADIHGIRDGPRLGRLRVLNKHPKLFDGYKFYFMGDFIPSYKGYLQELVVAAGGIILHRKPVSGDQESMLPDMHPYQTVIIYSLEIPDKCKPSKEDTICSQRRHVAEVLASSTGSKVASNTWILNSIAACKLQCLGQ 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02266 986 MobiDBLite consensus disorder prediction 504 536 - -
Cca08g02266 986 SMART ring_2 13 50 IPR001841 -
Cca08g02266 986 SMART ring_2 670 716 IPR001841 -
Cca08g02266 986 Gene3D BRCT domain 871 979 IPR036420 -
Cca08g02266 986 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 3 984 - -
Cca08g02266 986 SUPERFAMILY BRCT domain 763 861 IPR036420 -
Cca08g02266 986 ProSiteProfiles BRCT domain profile. 870 976 IPR001357 -
Cca08g02266 986 Pfam PHD-like zinc-binding domain 638 717 - -
Cca08g02266 986 SMART BRCT_7 758 839 IPR001357 -
Cca08g02266 986 SMART BRCT_7 872 979 IPR001357 -
Cca08g02266 986 Pfam BRCA1 C Terminus (BRCT) domain 788 836 IPR001357 -
Cca08g02266 986 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Cca08g02266 986 ProSiteProfiles Extended PHD (ePHD) domain profile. 597 717 IPR034732 -
Cca08g02266 986 MobiDBLite consensus disorder prediction 337 374 - -
Cca08g02266 986 SMART PHD_3 669 717 IPR001965 -
Cca08g02266 986 MobiDBLite consensus disorder prediction 221 260 - -
Cca08g02266 986 SUPERFAMILY BRCT domain 874 982 IPR036420 -
Cca08g02266 986 CDD BRCT_Bard1_rpt1 763 842 - -
Cca08g02266 986 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Cca08g02266 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Cca08g02266 986 MobiDBLite consensus disorder prediction 97 151 - -
Cca08g02266 986 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 984 IPR031099 GO:0006281|GO:0006974
Cca08g02266 986 SUPERFAMILY RING/U-box 4 74 - -
Cca08g02266 986 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Cca08g02266 986 Gene3D BRCT domain 759 865 IPR036420 -
Cca08g02266 986 ProSiteProfiles BRCT domain profile. 788 849 IPR001357 -
Cca08g02266 986 MobiDBLite consensus disorder prediction 734 755 - -
Cca08g02266 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 719 IPR013083 -
Cca08g02266 986 MobiDBLite consensus disorder prediction 97 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02266 Cca-Chr8 56313471 56319295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02266 6 87 RAD5 or RAD16-like Gene Family AT5G22750 30.588 4.99e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02266 K10683 - gmx:100804958 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02266 08 56313471 56319295 Cca08g02266 08 56313471 56319295 ECH