Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g02266 | ATGGGGGATTTGGAGCGAATGGGAAGAGAACTGAAATGTCCGATCTGTTGGAGTTTGCTCGATTCCGCGGTTTCGCTTACCTGCAACCATCTTTTCTGCAACTCCTGTATATTCAAGTCCATGAAATCAGCCTCTGCGTGTCCCGTCTGTAAAATTCCTTTCACGCGCCGAGAGGTTCGTCCTGCGCCTCACATGGACAACTTGGTCAGCATATATAAAAACATGGAAGCTGCTTCGGGAATTAATATATTTGTCACCCAGAATGCACCTGTTACTAAATTATCAGATGAAGAAAAGCAATGTGAAGGTGGTGCTGACAACTCTGACAACGTGGAAGCTGGTGAGACTCATAAAAGTCATGCACGGGGGAAGAAAACCGTTAAGAGAAAGAAGTCGAAGACAGTTCAGACCAGCACGGAAGGTTCAGGCTCTGGTTATGACTTTGCAAAACCTTCTTTTCCTGCAAAGAAAAGGGTGCAGGTGCCGCAAAATATTCTTTCAGAAACTCCGTTAAAGAATGTGAAGGTTGGAGACTCTGTTGGTGACATTAACAAAGAGGGAACTGAAAAGGTGTCAGTTATGGAAGATGAAAGGCCTCTCCAAAGTGAAAAATGTGATCCTGTTCTTTCACCATTCTTTTGGTTGAGAGAGGAAAAAGATGGTGAAAAGTTGAGTCAACCAACTGATGAGGATCAAGTTATTGACGGCTTAACACCAAACCCTCCCTCATTCAGTGATCTCAAGGACTCTGATGATGAAAATCCCCCGTCGGATGAGGTGCTAAATAAAAGTGCTGTTAATTTATTTGATAGTGATATGTTTGAATGGACACAGAGGCCTTGCTCTCCTGAATTGTTTTCAAGTCCCTCCAAAATGCAGGTCAAAGATACTTATGAGGATGATGAAAATCAAGAGGAATTGGTGGCTGCCACAATGGAGCTGGATGCAAATCAGGCAAGTGCTGATTCTGACAACATAAAACTTGAGAATCTCAAAGAAGGAAACAGATTGGTTGATGCATTACCACCGAGTATGTCTCCTCCTCACATTAGAAGTATGGATGATCTAAATGGAAAGAAAAGGTCTACAAAAAGAGGCAGAAAGGCTAGGGAAAAAATTAGGCAAGATCAGATTGGGGAACCAAAGAATTCAATTGACAGAATGCATGTTGATTCAAATATATCAATAGAAGTCTCTCATGAACAAGCATTGAACTCTAATCACAAATCTTCTTATTTGGGGAAGGTTACTAGAATGGCCAAGAGGGTTTGTTTCAGTACCAGTTCCATTCCAACACCTATAACTGCTTGTACGGTTCCCAGCACATTAGGAGGTTTAGGCAATAGTGACATGAAGATCGCTAAGAATTCAAATACTTCACTATGTAAACAAGAAAATGAGAAGCAATGTCCTCAGGAGATTGCTCTAAAAGGCCATATGAAGAGGTCTGGAAAACAAAATATTGACCAAACCAATGAGTTTGCTGGTTCTGCTTCATCCATTTTTAGTCTGCAGACAGATCATAATGGGAAGACCTCATCTAATAGAAAGCAAAGCAAAAAGAAGTTTTCCAGAAAATCTATGTCCTGCAGTAAAGAATTCAGAACTACTAAAAAGCCAAAACTTTCCTCTGATTGTATCTCCAAGACTAAAAACGGTGTAGAAATTCTACCTAATGAAAGTATTCATCAAGGTCCGGAAGTTAGGAATTTGAATAATACATCAAAAGAAAAGCATTGTTCTTTGATGGATGAAACATTTTTAAAGAAATGTGGGAGTCATGTAAAAAAGTATCAATGTGTTTTCTGTCACTCATCAGAAGAATCAGAGGTTTCTGGCCCTTTGGTGCATTACCTTGATGGCAAGCCTGTAACTGCAGATTATGAAGAGGGGTCTAAAGTAACTCATTGTCACAGGAACTGCACAGAATGGGCCCCCGATGTATACTTTGATGGTGATGATGCAATAAATCTTGAAGCTGAAATTTGTAGAAGTCGAAGAATTAAATGTAGTTTCTGTGGACTTAAAGGGGCTGCACTTGGTTGTTTTGAGAAAAGTTGTCGCCGGAGCTTTCATGTTCCTTGTGCCAAATGGACTTCTCAATGTCGATGGGATACGCAAAATTTCGTCATGTTATGCCCTCTGCATTCTTCCTCCATGTTGCCCTGTGAAGGTTCTGGATCCCAAAAAAGGAGCAAGAAATGCACAGCTAGAGAGGGAAAAAACCATGGTCCTGAACATGACACTACAAGCCAAAGTCGGACTGCTCATAGATCATACAAGAAAATTGTACTATGTTGTTCTGCTCTATCCGTACAGGAGAGGAAAGTTGTTTCTGAATTTGAAAGAGTATCCAAGGTTACAGTCTTAAAAGATTGGGACTCAAGTGTTACCCATGTTATAGCTTCCACGGATGAAAATGGGGCATGCAAAAGGACCCTCAAGGTATTGTTGGGTATCTTGGAGGGAAAGTGGATTCTCAATATTGAATGGATCAAAGCTTGCTTGAAGGAAAAGGATCCCGTTGATGAAGAGTGGTATGAAATTAATGCTGACATCCATGGAATTAGGGATGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCATCCAAAGCTTTTTGATGGCTACAAGTTTTACTTTATGGGAGATTTTATACCTTCATACAAGGGGTATCTGCAAGAACTTGTGGTTGCTGCTGGAGGGATAATTTTGCACAGAAAACCAGTGTCTGGTGACCAAGAGTCAATGTTACCAGATATGCATCCATACCAAACCGTCATAATTTACAGCCTCGAGATTCCTGATAAATGTAAGCCTTCGAAAGAGGATACAATTTGCAGCCAAAGGCGCCACGTTGCAGAGGTTCTAGCAAGTTCTACAGGTTCAAAGGTAGCAAGTAATACATGGATTCTGAATTCAATTGCAGCCTGCAAACTGCAATGCCTTGGTCAATGA | 2961 | 0.4097 | MGDLERMGRELKCPICWSLLDSAVSLTCNHLFCNSCIFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGINIFVTQNAPVTKLSDEEKQCEGGADNSDNVEAGETHKSHARGKKTVKRKKSKTVQTSTEGSGSGYDFAKPSFPAKKRVQVPQNILSETPLKNVKVGDSVGDINKEGTEKVSVMEDERPLQSEKCDPVLSPFFWLREEKDGEKLSQPTDEDQVIDGLTPNPPSFSDLKDSDDENPPSDEVLNKSAVNLFDSDMFEWTQRPCSPELFSSPSKMQVKDTYEDDENQEELVAATMELDANQASADSDNIKLENLKEGNRLVDALPPSMSPPHIRSMDDLNGKKRSTKRGRKAREKIRQDQIGEPKNSIDRMHVDSNISIEVSHEQALNSNHKSSYLGKVTRMAKRVCFSTSSIPTPITACTVPSTLGGLGNSDMKIAKNSNTSLCKQENEKQCPQEIALKGHMKRSGKQNIDQTNEFAGSASSIFSLQTDHNGKTSSNRKQSKKKFSRKSMSCSKEFRTTKKPKLSSDCISKTKNGVEILPNESIHQGPEVRNLNNTSKEKHCSLMDETFLKKCGSHVKKYQCVFCHSSEESEVSGPLVHYLDGKPVTADYEEGSKVTHCHRNCTEWAPDVYFDGDDAINLEAEICRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTSQCRWDTQNFVMLCPLHSSSMLPCEGSGSQKRSKKCTAREGKNHGPEHDTTSQSRTAHRSYKKIVLCCSALSVQERKVVSEFERVSKVTVLKDWDSSVTHVIASTDENGACKRTLKVLLGILEGKWILNIEWIKACLKEKDPVDEEWYEINADIHGIRDGPRLGRLRVLNKHPKLFDGYKFYFMGDFIPSYKGYLQELVVAAGGIILHRKPVSGDQESMLPDMHPYQTVIIYSLEIPDKCKPSKEDTICSQRRHVAEVLASSTGSKVASNTWILNSIAACKLQCLGQ | 986 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g02266 | 986 | MobiDBLite | consensus disorder prediction | 504 | 536 | - | - | |
Cca08g02266 | 986 | SMART | ring_2 | 13 | 50 | IPR001841 | - | |
Cca08g02266 | 986 | SMART | ring_2 | 670 | 716 | IPR001841 | - | |
Cca08g02266 | 986 | Gene3D | BRCT domain | 871 | 979 | IPR036420 | - | |
Cca08g02266 | 986 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN | 3 | 984 | - | - | |
Cca08g02266 | 986 | SUPERFAMILY | BRCT domain | 763 | 861 | IPR036420 | - | |
Cca08g02266 | 986 | ProSiteProfiles | BRCT domain profile. | 870 | 976 | IPR001357 | - | |
Cca08g02266 | 986 | Pfam | PHD-like zinc-binding domain | 638 | 717 | - | - | |
Cca08g02266 | 986 | SMART | BRCT_7 | 758 | 839 | IPR001357 | - | |
Cca08g02266 | 986 | SMART | BRCT_7 | 872 | 979 | IPR001357 | - | |
Cca08g02266 | 986 | Pfam | BRCA1 C Terminus (BRCT) domain | 788 | 836 | IPR001357 | - | |
Cca08g02266 | 986 | Pfam | Zinc finger, C3HC4 type (RING finger) | 12 | 50 | - | - | |
Cca08g02266 | 986 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 597 | 717 | IPR034732 | - | |
Cca08g02266 | 986 | MobiDBLite | consensus disorder prediction | 337 | 374 | - | - | |
Cca08g02266 | 986 | SMART | PHD_3 | 669 | 717 | IPR001965 | - | |
Cca08g02266 | 986 | MobiDBLite | consensus disorder prediction | 221 | 260 | - | - | |
Cca08g02266 | 986 | SUPERFAMILY | BRCT domain | 874 | 982 | IPR036420 | - | |
Cca08g02266 | 986 | CDD | BRCT_Bard1_rpt1 | 763 | 842 | - | - | |
Cca08g02266 | 986 | ProSitePatterns | Zinc finger RING-type signature. | 28 | 37 | IPR017907 | - | |
Cca08g02266 | 986 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 82 | IPR013083 | - | |
Cca08g02266 | 986 | MobiDBLite | consensus disorder prediction | 97 | 151 | - | - | |
Cca08g02266 | 986 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 | 3 | 984 | IPR031099 | GO:0006281|GO:0006974 | |
Cca08g02266 | 986 | SUPERFAMILY | RING/U-box | 4 | 74 | - | - | |
Cca08g02266 | 986 | ProSiteProfiles | Zinc finger RING-type profile. | 13 | 51 | IPR001841 | - | |
Cca08g02266 | 986 | Gene3D | BRCT domain | 759 | 865 | IPR036420 | - | |
Cca08g02266 | 986 | ProSiteProfiles | BRCT domain profile. | 788 | 849 | IPR001357 | - | |
Cca08g02266 | 986 | MobiDBLite | consensus disorder prediction | 734 | 755 | - | - | |
Cca08g02266 | 986 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 719 | IPR013083 | - | |
Cca08g02266 | 986 | MobiDBLite | consensus disorder prediction | 97 | 120 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g02266 | Cca-Chr8 | 56313471 | 56319295 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca08g02266 | 6 | 87 | RAD5 or RAD16-like Gene Family | AT5G22750 | 30.588 | 4.99e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g02266 | K10683 | - | gmx:100804958 | 1562.74 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca08g02266 | 08 | 56313471 | 56319295 | Cca08g02266 | 08 | 56313471 | 56319295 | ECH |