Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02262 ATGGGTTTTGAGCCATTGGTTTGGTATTGTCGGCCGGTTGCTAATGGAGCATGGAGCAAAGCAGTGGAGAATGCGTTTGGTGTTTACACTCCTTGTGCAGTCGACTCTCTTGTCATCTCCGTTTCTCACTTGGTACTTCTAGGCCTGTGCATTTACCGCATATGGTTGATTCAGAAGGATTTCAAAGTCAAGAGGTTCTGTTTGAGGTCAAACCTTTACAACTATATGCTGGGATTGTTAGCTTTATATTGTGTGGCAGAGCCCTTATACAGATTGATCATGGGCGTATCACTTCTAAATTTAGATGGGCAGACTCAACTGGCTCCATTTGAGATAACTTCACTGATCATTGAGGCTTTTGCTTGGTGCTCTATGTTGATTTTGATTGGGATTGAAACCAAAGTTTACATCCGGGAATTCCGATGGTTTGTCAGATTTGGTTTGATTTATGCTATTGTTGGGGATGCTGTAATGTTCAATCTCATCATTTCTGTGAAGGAGTTCTATAGCAGCTCTGTGATGTATTTGTACATCAGTGAGGTGGTTAGCCAGGTTTTGTTTTGTATACTTTTGCTTGTGTATGTTCCTACTTTGGATCCTTATCCAGGTTATACCCCCATTGGAAGTGAGATGATTACTGATGCTGCATATGATGAACTCCCTGGAGGAGATATGATATGTCCTGAGAGGAGTGGCAGCATATTGTCAAGGTTAACGTTTTCTTGGATGAATCCTCTCATGAAACTAGGATATGAAAGACCACTGACAGAAAAAGATATATGGAAATTAGACACATGGGAACGGACAGAGACACTGATCAATAAGTTCCAGAAATGTTGGGTTGAGGAGTCTCGAAAGCCAAAACCTTGGCTTTTAAGAGCATTAAATGCAAGCCTTGGAGCAAGGTTTTGGTGGGGAGGCTTTTGCAAGATTGGCAATGATATTTCCCAATTTTTGGGCCCTCTTATACTGAATCAGCTGCTACAGGCTATGCAAAATGGGGATCCATCATGGACTGGCTATGTTTATGCCTTCTCAATATTTCTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATTGCATGCGTGTTGGTTACCGGTTAAGATCAACATTGGTGGCTGCTGTATTCCGCAAGTCTCTACGGCTTACACATGAAGCACGAAAGCAATTTGCAACTGGAAAAATAACCAACTTGATGACTACTGATGCTGAGGCACTTCAGCAAATATGTCAGTCTCTTCACACATTGTGGTCAGCTCCATTTCGGATTATTGTTGCTATGGTTCTTCTTTACCAACAACTTGGTGTTGCTTCCCTTCTTGGTGCTTTGATGCTAGTTCTTATGTTTCCGTTACAGACATTTATCATCAGCAGAATGCAGAAGTTTTCTAAGGAAGGTTTACAGCGTACTGACAAAAGAATTGGTCTCATGAATGAAATTTTGGCTGCTATGGACACCGTAAAGTATTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTTCAGGTTGCCCGAAATGATGAATTATCATGGTTTCGAAAAGCATCGTTACTTGGAGCGTTGAATGGATTTATACTAAATAGCATCCCAGTTTTTGTAACTGTGATTACATTTGGAGTATTCACCTTGCTTGGGGGGGATCTGACACCTGCAAGAGCTTTTACATCACTCTCACTGTTTGCTGTGCTTCGGTTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGGTGGTTAACGCAAATGTATCATTGAAGCGACTAGAAGATTTACTCTTAGCAGAAGAGAGAATACTTCTGCCAAATCCACCTCTTGAGCCAAGGTCACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATGAAAAGGCAGAGAGGGCCACATTGTCAAACATAAATGTGGATATACCTGTTGGTTCCCTAGTTGCAGTTGTTGGAAGTACAGGAGAAGGGAAGACATCATTAGTATCTGCAATGCTCGGAGAACTTCCTCCAATGGCAGCAGATACATCCGTAGTAATGAGAGGAACAGTTGCTTATGTACCCCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAATGTCTTGTTTGGCTCTGTCTTTGACCCAACAAGATATCAAAGAGCAATAAATGTGACTGAACTGCAGCATGACCTTGAGTTACTGCCTGGTGGTGATCTTACTGAAATCGGTGAAAGAGGAGTAAACATCAGCGGTGGCCAGAAGCAGAGAGTGTCCATGGCTAGAGCTGTCTATTCCAATTCTGACGTGTACATCTTTGATGACCCCCTAAGTGCTCTTGATGCGCATGTGGCTAGACAGGTTTTTGATAAATGCATCAAGGGAGAATTAAGGGGGAAGACCCGAGTTCTTGTTACAAATCAGCTGCATTTCCTTTCCGAGGTTGATAGAATCATTTTGATCCATGAAGGTATGGTGAAGGAGGAGGGGACTTTTGAGGAACTCTCTAACCAGGGACCGCTGTTCCAAAAGCTTATGGAAAATGCAGGAAAGATGGAGGAGTATGAAGAAGATAAGGTAGATACTGAAACCACTGATCAGAAGCCCTCTTCGAAACCCGTGGCCAATGGAGCAGTTAATGACAATGCAAAGAGTGGAAGTAAACCAAAAGAAGGAAAATCCATCCTTATCAAACAAGAAGAACGAGAAACAGGTGTTGTTAGCTGGAATGTTCTAATCAGGTACAAAAATGCTTTAGGAGGGCTGTGGGTTGTTATGGTGCTCTTTGCATGCTATATCTTAACGGAAACATTACGAATATCAAGTAGCACATGGTTAAGCCATTGGACTGACCAGGGTGCTACAGAGGGTTATAACCCCGCCTTCTACAATATGATATATGCAGCTCTATCATTTGGGCAGGTCTTGGTTACTTTAACAAATTCTTACTGGATAATCATATCAAGTCTTTATGCAGCCAGAAGGTTGCATGAAGCCATGCTGAGCTCCATATTACGAGCTCCCATGGTGTTTTTCCAAACAAATCCACTAGGAAGAGTTATCAACCGGTTCGCGAAGGATCTAGGTGACATTGATCGTAATGTTGCTCCATTTATGAATATGTTTCTAGGTCAAGTGTCCCAGCTTCTTTCAACCTTCATCCTCATAGGCATTGTCAGCACAATGTCCTTGTGGGCAATACTGCCATTATTGGTGTTGTTTTACGTAGCATATCTATACTATCAGAGCACCGCCCGCGAAGTGAAGCGCTTAGATTCAATCAGCAGATCTCCGGTATATGCACAGTTTGGAGAAGCACTGAATGGCTTATCAACGATTCGCGCTTACAAAGCGTATGATCGAATGGCAGATATAAACGGGAAATCCATGGACAACAACATCCGATTCACTCTGGTGAACATAAGTGGAAACCGATGGCTCGCAATCCGATTGGAAACTTTGGGAGGCCTCATGATATGGTTAACTGCAACTTTTGCTGTCATGCAGAATGGGAGAGCTGAGAACCAGCAAGAATTCGCATCCACTATGGGGTTACTGCTTAGCTATGCTCTGAACATTACTAGCTTGCTTACTGGCGTGCTCAGGCTTGCTAGTTTGGCTGAAAATAGTTTAAACGCTGTTGAACGGATTGGCACTTACATAGATTTGCCCTCGGAGGCTCCCTCTATCATTGATCATAATCGCCCTCCTCCTGGCTGGCCTTCTTCGGGCTCAATTAGATTCGAAGATGTTGTTCTTCGCTACAGGCCTGAACTTCCTCCTGTATTGCATGGCTTGTCTTTCACCATTTTCCCCAGCGATAAGGTTGGCATCGTTGGTAGGACAGGTGCCGGAAAATCCAGCATGCTTAATGCTTTGTTTCGAATTGTGGAATTGGAACGAGGAAGAATATTAATTGATGATTATGATGTTGCAAAGTTTGGGCTCGCTGATTTGCGTAAAGTTCTTGGCATTATTCCACAATCTCCTGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCATTTAATGAACACAATGATGCTGATCTCTGGGAGTCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGCTTGGATGCTGAGGTATCTGAGGCAGGCGAGAACTTCAGTGTTGGACAAAGGCAACTGTTGAGTCTTTCCCGGGCTTTATTGCGTAGATCGAAGATATTAGTACTTGACGAGGCAACCGCAGCAGTCGATGTTAGAACAGACGCACTCATACAGAAAACAATTCGAGAGGAATTCAAGTCCTGTACAATGCTCATTATTGCTCATCGTCTTAACACCATTATTGATTGTGATCGGATTCTTTTGCTTAATGGTGGTAAGGTTCTTGAATATGATACTCCTGAAGAGCTGCTGTCAAATGAAGGTAGTTCTTTCTCTAAGATGGTTCAAAGCACAGGAGCTGCAAATGCCCAATATTTACGCAGCTTAGCATTTGGTGGGGATAAATCAGAAAGAGAAGAGAACAAGCATCTAGATGGCCAGAGAAAATGGATGGCTTCTTCTCGGTGGGCTGCTGCAGCCCAATTTGCTCTTGCTGTTAGTCTCACCTCATCCCACAATGATCTACAACGATTAGAAGTTGAAGACGAGAATAGTATTCTCAAGAAGACAAAGGATGCTTTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGAAATCTTTAGAGCATCACCAAATATCACCAGAGGGCTGGTGGTCATCTCTTTATAAAATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGACTCCATTCAGACTTCAGTTTTGAGGACAGATCAATTAATTTCGATCAAATTGATATGTAG 4860 0.4259 MGFEPLVWYCRPVANGAWSKAVENAFGVYTPCAVDSLVISVSHLVLLGLCIYRIWLIQKDFKVKRFCLRSNLYNYMLGLLALYCVAEPLYRLIMGVSLLNLDGQTQLAPFEITSLIIEAFAWCSMLILIGIETKVYIREFRWFVRFGLIYAIVGDAVMFNLIISVKEFYSSSVMYLYISEVVSQVLFCILLLVYVPTLDPYPGYTPIGSEMITDAAYDELPGGDMICPERSGSILSRLTFSWMNPLMKLGYERPLTEKDIWKLDTWERTETLINKFQKCWVEESRKPKPWLLRALNASLGARFWWGGFCKIGNDISQFLGPLILNQLLQAMQNGDPSWTGYVYAFSIFLGVVFGVLCEAQYFQNCMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHTLWSAPFRIIVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKFSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQVARNDELSWFRKASLLGALNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLPNPPLEPRSPAISIKNGYFSWDEKAERATLSNINVDIPVGSLVAVVGSTGEGKTSLVSAMLGELPPMAADTSVVMRGTVAYVPQVSWIFNATVRDNVLFGSVFDPTRYQRAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSEVDRIILIHEGMVKEEGTFEELSNQGPLFQKLMENAGKMEEYEEDKVDTETTDQKPSSKPVANGAVNDNAKSGSKPKEGKSILIKQEERETGVVSWNVLIRYKNALGGLWVVMVLFACYILTETLRISSSTWLSHWTDQGATEGYNPAFYNMIYAALSFGQVLVTLTNSYWIIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFMNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDHNRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLNGGKVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLAFGGDKSEREENKHLDGQRKWMASSRWAAAAQFALAVSLTSSHNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEKSLEHHQISPEGWWSSLYKMIEGLAMMSRLARNRLHSDFSFEDRSINFDQIDM 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02262 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 32 1512 - -
Cca08g02262 1619 CDD ABCC_MRP_domain1 615 816 - -
Cca08g02262 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02262 1619 Gene3D ABC transporter type 1, transmembrane domain 881 1219 IPR036640 GO:0005524|GO:0016021
Cca08g02262 1619 Gene3D ABC transporter type 1, transmembrane domain 277 601 IPR036640 GO:0005524|GO:0016021
Cca08g02262 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 919 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02262 1619 MobiDBLite consensus disorder prediction 859 875 - -
Cca08g02262 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1238 1472 IPR003439 GO:0005524
Cca08g02262 1619 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524
Cca08g02262 1619 Gene3D - 607 864 IPR027417 -
Cca08g02262 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 839 IPR027417 -
Cca08g02262 1619 Pfam ABC transporter transmembrane region 918 1161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02262 1619 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g02262 1619 SMART AAA_5 642 821 IPR003593 -
Cca08g02262 1619 SMART AAA_5 1264 1457 IPR003593 -
Cca08g02262 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1464 IPR027417 -
Cca08g02262 1619 SUPERFAMILY ABC transporter transmembrane region 914 1218 IPR036640 GO:0005524|GO:0016021
Cca08g02262 1619 SUPERFAMILY ABC transporter transmembrane region 287 595 IPR036640 GO:0005524|GO:0016021
Cca08g02262 1619 CDD ABC_6TM_ABCC_D2 917 1213 IPR044726 GO:0140359
Cca08g02262 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 840 IPR003439 GO:0005524
Cca08g02262 1619 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Cca08g02262 1619 ProSitePatterns ABC transporters family signature. 1375 1389 IPR017871 GO:0005524
Cca08g02262 1619 Gene3D - 1221 1474 IPR027417 -
Cca08g02262 1619 MobiDBLite consensus disorder prediction 846 887 - -
Cca08g02262 1619 Pfam ABC transporter 633 769 IPR003439 GO:0005524
Cca08g02262 1619 Pfam ABC transporter 1255 1403 IPR003439 GO:0005524
Cca08g02262 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 32 1512 - -
Cca08g02262 1619 CDD ABCC_MRP_domain2 1236 1456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02262 Cca-Chr8 56228165 56248581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02262 615 832 Calmodulin-binding Proteins AT2G36910 26.957 2.22e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02262 - - gmx:100795004 2958.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02262 08 56228165 56248581 Cca08g02262 08 56228165 56248581 ECH