Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02261 ATGGAGGAGGATGAGATTGAAGCACAGGCGTGTAAGTTCCCTAGAGTTGGAAATAGTAGAAACGAGATAGGTTCCAGCAGAGGGAGTGAGGAGGAGGATGGAGAACAAAGAAGAAGAAGTGTTGGTAGCACAAACCATTTCCAAAGTAGTTGGCACCACTCTTCAAGAATCATAAGGGTGTCTAGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTAATGACCTCAAAAGGGTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGATCAACCCAGCAAAGCCGTGGAGTGGTTAATCAAAGCTGCTGAAGATGCCATCTCAGAGCTTCCTTCACTCAACAACCCTTTCCCTGATACCCCTAAGCAACAAAGTGATGAGAAAAGGCCTAGTGGGTTTGATGATGCAGATGCAGACCTGCAGCAAAACCAAAGCCAGAATGTGTCTCTGTCCAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGCAAGGGGTCTGGCTTGTCCCTCTCAAGGTCTGAGATCCGTGTGAAGGCAAGGGAGAGGGCAAGGGAAAGAGCAGCAAAAGACAAGGAGAAAGAAAAGGAGGAGAAGGAAAAAGATTGCAGCATTGGACATCACCAAAACAATGTCCCCATGTCTCACACTGCTTCTTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACAGCAACCACAAGTCCTAATGGATCGTCAGTTCATCAGATCCATGATGAGCCCAATCTATTGATCAACAAGGGAAGGCAACATTGGTCCTCAACAGTGACACCTAGTCCTATGGACTACTTCAGCTCAGGCCTCTTGGTTTCATCTGCAAGAACAGCACAACACCAATATGCGCCTCCATTCAGTGGAGGAGACCAGATGCAGCATTTCTCCTTCATGTCTGACCATCTTAACATGCCAGCTATGGTTACTTCTTCTCAGCCTCAGCCTAGCGGGGGTGACTACAACCTCAACTTCAGCATCTCTAATGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGCTTCAGTTCTCACCTGTCTTCGATGGAACCAGACATTCTGACCACAAGGGCAAAGGCAAGAACTAAGTTCCTCGCATGGTTATCATTCAAGTTGAGAAAAGTTGAGAAAAGAATACAGACACACAAAAGCAACTCTCCTGTTCACAGATCTGTGAGGTGTCGGAACAGTCACTCACGTCACCAACACACCACACTCTTTCTTTCTTTTCTCCTTCGCAAAACCCGATCCAACAATGTTCAAAGATATGAAAAAGCTTTAAACAAACACAAGCAGAAGCGAAAAGGGACTTGGATCAAGGGAGGTGAGGATGAGGCTCTGAGACCTACTCAGTCTTTTGCTTTTGAAAGCTTTTTTTTTCTTTCTGCGATTGAAAAAAGCTTCTGA 1479 0.4652 MEEDEIEAQACKFPRVGNSRNEIGSSRGSEEEDGEQRRRSVGSTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDAISELPSLNNPFPDTPKQQSDEKRPSGFDDADADLQQNQSQNVSLSKSACSSTSETSKGSGLSLSRSEIRVKARERARERAAKDKEKEKEEKEKDCSIGHHQNNVPMSHTASFTELLTGGIGSTATTSPNGSSVHQIHDEPNLLINKGRQHWSSTVTPSPMDYFSSGLLVSSARTAQHQYAPPFSGGDQMQHFSFMSDHLNMPAMVTSSQPQPSGGDYNLNFSISNGYNRGTLQSNSPSFLPHLQSFSSHLSSMEPDILTTRAKARTKFLAWLSFKLRKVEKRIQTHKSNSPVHRSVRCRNSHSRHQHTTLFLSFLLRKTRSNNVQRYEKALNKHKQKRKGTWIKGGEDEALRPTQSFAFESFFFLSAIEKSF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02261 492 ProSiteProfiles R domain profile. 186 206 IPR017888 -
Cca08g02261 492 Pfam TCP family transcription factor 65 206 IPR017887 -
Cca08g02261 492 MobiDBLite consensus disorder prediction 25 40 - -
Cca08g02261 492 PANTHER TRANSCRIPTION FACTOR TCP24 1 383 - -
Cca08g02261 492 Coils Coil 437 457 - -
Cca08g02261 492 MobiDBLite consensus disorder prediction 187 218 - -
Cca08g02261 492 MobiDBLite consensus disorder prediction 62 78 - -
Cca08g02261 492 MobiDBLite consensus disorder prediction 1 78 - -
Cca08g02261 492 Coils Coil 190 214 - -
Cca08g02261 492 MobiDBLite consensus disorder prediction 124 225 - -
Cca08g02261 492 MobiDBLite consensus disorder prediction 41 57 - -
Cca08g02261 492 ProSiteProfiles TCP domain profile. 66 124 IPR017887 -
Cca08g02261 492 MobiDBLite consensus disorder prediction 151 183 - -
Cca08g02261 492 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 383 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02261 Cca-Chr8 56172793 56185821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02261 44 378 TCP Transcription Factor Family AT4G18390 48.267 2.89e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca08g02261 TCP 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02261 - - gmx:100806032 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02261 08 56172793 56185821 Cca08g02261 08 56172793 56185821 ECH