Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02260 ATGGAGGAGGATGAGATTGAAGCACAGGCGTGTAAGTTCCCTAGAGTTGGAAATAGTAGAAACGAGATAGGTTCCAGCAGAGGGAGTGAGGAGGAGGATGGAGAACAAAGAAGAAGAAGTGTTGGTAGCACAAACCATTTCCAAAGTAGTTGGCACCACTCTTCAAGAATCATAAGGGTGTCTAGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTAATGACCTCAAAAGGGTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCCATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTATGATCAACCCAGCAAAGCCGTGGAGTGGTTAATCAAAGCTGCTGAAGATGCCATCTCAGAGCTTCCTTCACTCAACAACCCTTTCCCTGATACCCCTAAGCAACAAAGTGATGAGAAAAGGCCTAGTGGGTTTGATGATGCAGATGCAGACCTGCAGCAAAACCAAAGCCAGAATGTGTCTCTGTCCAAGTCTGCTTGTAGCAGCACTTCTGAGACAAGCAAGGGGTCTGGCTTGTCCCTCTCAAGGTCTGAGATCCGTGTGAAGGCAAGGGAGAGGGCAAGGGAAAGAGCAGCAAAAGACAAGGAGAAAGAAAAGGAGGACAAGGAAAAAGATTGCAGCATTGGACATCACCAAAACAATGTCCCCATGTCACACACTGCTTCTTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACAGCAACCACAAGTCCTAATGGATCATCAGTTCATCAGATCCATGATGAGGCCAATCTATTCAACAAGGGAAGGCAACATTGGTCCTCAACAGTGACTCCTAGTCCTATGGACTACTTCAGCTCAGGCCTCTTGGTTTCATCTGCAAGAACAGCACAACACCAATATGCCCTTCCATTCAGTGGAGGAGACCAGATGCAGCATTTCTCCTTCATGTCTGACCATCTTAACATGCCAGCTATGGTTACTTCTTCTCAGCCTCAGCCTAGCGGGGGTGACTACAACCTCAACTTCAGCATCTCTAATGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGCCTCAGTTCTCACCTGTCTTCGATGGAACCAGACATTCTGACCACAAGGGCAAAGGCAAGAACTAAGTTCCTCGCATGGTTGACATTCAAGTTGAAAAGAGAATGCATGAAGACTTCTTGA 1212 0.4761 MEEDEIEAQACKFPRVGNSRNEIGSSRGSEEEDGEQRRRSVGSTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDAISELPSLNNPFPDTPKQQSDEKRPSGFDDADADLQQNQSQNVSLSKSACSSTSETSKGSGLSLSRSEIRVKARERARERAAKDKEKEKEDKEKDCSIGHHQNNVPMSHTASFTELLTGGIGSTATTSPNGSSVHQIHDEANLFNKGRQHWSSTVTPSPMDYFSSGLLVSSARTAQHQYALPFSGGDQMQHFSFMSDHLNMPAMVTSSQPQPSGGDYNLNFSISNGYNRGTLQSNSPSFLPHLQSLSSHLSSMEPDILTTRAKARTKFLAWLTFKLKRECMKTS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02260 403 ProSiteProfiles R domain profile. 186 206 IPR017888 -
Cca08g02260 403 MobiDBLite consensus disorder prediction 25 40 - -
Cca08g02260 403 PANTHER TRANSCRIPTION FACTOR TCP24 1 374 - -
Cca08g02260 403 MobiDBLite consensus disorder prediction 187 218 - -
Cca08g02260 403 MobiDBLite consensus disorder prediction 62 78 - -
Cca08g02260 403 MobiDBLite consensus disorder prediction 1 78 - -
Cca08g02260 403 Pfam TCP family transcription factor 65 206 IPR017887 -
Cca08g02260 403 MobiDBLite consensus disorder prediction 124 225 - -
Cca08g02260 403 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 374 IPR005333 GO:0003700
Cca08g02260 403 Coils Coil 193 213 - -
Cca08g02260 403 MobiDBLite consensus disorder prediction 41 57 - -
Cca08g02260 403 ProSiteProfiles TCP domain profile. 66 124 IPR017887 -
Cca08g02260 403 MobiDBLite consensus disorder prediction 151 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02260 Cca-Chr8 56168944 56172596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02260 44 377 TCP Transcription Factor Family AT4G18390 47.861 2.05e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca08g02260 TCP 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02260 - - gmx:100806032 409.838