Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02251 ATGAGGAGAAACTGCAACTTGGAACTTGCCCTCTTTCCTCCCTGCGATTCTGGCCCTCGCCACCACTCTTTGGTTGAAGATGCTAGTGAGATCAGCCCAATGCAAAATTACCACCACCGCCAGGAACAGCAACAGCCTCTCACCATTTTCTATGATGGAAAGATTTGTGTTGCCGATGTCACAGAGCTTCAGGCCAAATCCATTTTAATGCTTGCGAATAAAAGAATGGAGCAAAGAGTGAGAACAGCAAGTGGGTCAGAGCCATCTTCACCAACAACCATGCAATCTCCTAATCAACTATATAGCCCTGGCACTGGCACTGGCACTGGTCTCTCCATGAGAAAATCGTTGCAGAGGTTCCTTCATAAGAGAAAGATTCGGGCCCAAGAAGCATCGCCATATCATCACTAG 411 0.4745 MRRNCNLELALFPPCDSGPRHHSLVEDASEISPMQNYHHRQEQQQPLTIFYDGKICVADVTELQAKSILMLANKRMEQRVRTASGSEPSSPTTMQSPNQLYSPGTGTGTGLSMRKSLQRFLHKRKIRAQEASPYHH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02251 136 MobiDBLite consensus disorder prediction 82 114 - -
Cca08g02251 136 Pfam tify domain 42 73 IPR010399 -
Cca08g02251 136 Pfam Jas motif 114 134 IPR018467 -
Cca08g02251 136 SMART tify_2 40 74 IPR010399 -
Cca08g02251 136 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 136 IPR040390 -
Cca08g02251 136 MobiDBLite consensus disorder prediction 78 116 - -
Cca08g02251 136 ProSiteProfiles Tify domain profile. 40 74 IPR010399 -
Cca08g02251 136 PANTHER - 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02251 Cca-Chr8 56070799 56073378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02251 1 135 Tify Gene Family AT1G30135 44.203 1.27e-26 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca08g02251 tify 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02251 - - gmx:100500349 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02251 08 56070799 56073378 Cca08g02251 08 56070799 56073378 ECH