Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02239 ATGGGCAAGCTAATAACCACTTCCAAACCTCTCATCCTCCACTCCAAGCTCCTCTGTTTTTCTCTGCTCTACCTCTTCACCACTCTTTTCCTCGCTCTCTACACCACTCTGTCACAGTCCAAATGCTTCTTCAGATCATCCCCTTCCGATCCCATTCAAAATTCTCTCTTCTCTTACCCTTCTTCTTACGGAGAGCACAAGTACGCTGTCTCAACCACCCGTTCCACATGCTCTTCCCCTGTCTTCTTTTCAGATTACTGGGATGTTGTCAAAGAGATCAGGAATTACCGCAAGAACAATCCGGCTTTTTCAGGGGCTCTTAGGTATATGCAGGGGAATGCTGATAGTTTCGGAGGGAATCTCAGCACCCTTATGAGGTTTTCATATTTCGATCATCAAAATGATACCACAGCAGTTCCCTGCGGGTTTCTCAAGAAGTTTCCTATCAGTGATTCTGATCGAACTGCGATGGAAAAGTGTGACAGTATAGTTGTTGTTTCAGCAATCTTCAATGATCATGACAAAATCCGTCAACCGAAGGGCCTTGGGTCCAACACATTGCAAGAAGTGTGTTTCTTTATGTTTGTAGACGATGTTACCCTTAAGGGTCTCGAACATCATGGAATGGTTTCAACAAAATCGAGAGAATACAAGATAGGTGTGTGGAGGATTGTGAAGGTTGCAACAGAGGATTTGTATCAGAACCCAGCAATGAATGGGGTTATACCAAAATATTTAGTCCATAGGCTATTCCCAAATTCCCAATTCAGCATTTGGATAGATGCAAAGTTGCAACTAATGGTTGATCCTCTGTTGTTGATTCATTCACTTGTTTTATCTGAGAATGTGGACATGGCTATATCTAAACACCCTTATTATGTTCATACCATGGAAGAAGCAATGGCAACTGCAAGATGGAAGAAATGGTGGGATGTCAATGCATTGAAGGTTCAAATGGAGACATACTGTGAAAATGGATTGCAACCATGGAGTCCCAGCAAGCAGCCTTATATGTCAGATGTGCCAGATAGTGCTTTGATATTGAGGAGGCATGGACTTGGCAGTAACCTCTTTTCCTGCCTTGTATTCAATGAGTTGGAGGCATTTAACCCAAGAGACCAATTGCCCTTTGCATTTGTTAGAGATCACATGAAGCCCAACCTGAAGGTGAACATGTTTGAGGTGGAAGTTTTTGAACAGGTGGCAGTGGAGTATAGACACAATCTCAAGAGCAGTGATGGGACCACTGTCAAGAAAGTGTCCAGTTCAGGAAGAACCAAAAGGGCACACCCAGATTTGTTGTATGCGAATGGAAGCTGCTGTAGCAAGTGCCAGAAGTATCTTTCTATAATGTGGGGGGAATCATCAAATGATTAA 1377 0.4314 MGKLITTSKPLILHSKLLCFSLLYLFTTLFLALYTTLSQSKCFFRSSPSDPIQNSLFSYPSSYGEHKYAVSTTRSTCSSPVFFSDYWDVVKEIRNYRKNNPAFSGALRYMQGNADSFGGNLSTLMRFSYFDHQNDTTAVPCGFLKKFPISDSDRTAMEKCDSIVVVSAIFNDHDKIRQPKGLGSNTLQEVCFFMFVDDVTLKGLEHHGMVSTKSREYKIGVWRIVKVATEDLYQNPAMNGVIPKYLVHRLFPNSQFSIWIDAKLQLMVDPLLLIHSLVLSENVDMAISKHPYYVHTMEEAMATARWKKWWDVNALKVQMETYCENGLQPWSPSKQPYMSDVPDSALILRRHGLGSNLFSCLVFNELEAFNPRDQLPFAFVRDHMKPNLKVNMFEVEVFEQVAVEYRHNLKSSDGTTVKKVSSSGRTKRAHPDLLYANGSCCSKCQKYLSIMWGESSND 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02239 458 PANTHER OS01G0210400 PROTEIN 1 455 - -
Cca08g02239 458 Pfam Protein of unknown function (DUF616) 113 407 IPR006852 -
Cca08g02239 458 PANTHER ALKALINE CERAMIDASE-RELATED 1 455 IPR006852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02239 Cca-Chr8 55881459 55884906 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02239 - - gmx:100809755 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02239 08 55881459 55884906 Cca08g02239 08 55881459 55884906 ECH
Cca08g02239 08 55881459 55884906 Cca09g01965 09 44639572 44651787 PCT