Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02233 ATGTCATTCAGGAAAATCGTCGAACACCTTCCGTTGAGGCGCAGCACACTCTCTTCCTTCCACCTCTTCACTTCCCCACTCTCCACCCATTCCCTCcaacagcaacagcaacagcaacagcaacagcaaGACCCTCACACCCTAATGAAACAAGACCCAATCCAAATATGCAGCTCTCTCTGGGTCAAAACCTTCTCCTCCCCCAAAACCACCTCCTTCCCCAACCTCACCGGCTTCCTCTCAAACTTCGACCTCTGGCTCTTCGCCTACCAACGCTCCTGCGCCCACGCCACCGGCACCTTCCCTCCGCGCAACGCCGTCCACGCCCCCCTCCTCCGCGACCTCCTCTCCCTCCGCAACGCCGTCCTCCGCGCCCGTTTCATCTGGAACGACAAAACAAACCCTCTCCTCCGCGCCCCCAACGACACCGCCCTTTCCAAGCCCCTCTCCAAACGCAAACTCCAAAACATTCTCCAATCCAGCGAGCCCTGCTTCCAAGACCGCGTCGTTCAGGAGGTTCTCTTAATGATCCTCGAACCCGTCTTCGAACCACGCTTCTCCCCCAAATCGCACGCGTTTCGACCCGGTCGAAACGCCCACACTGTTATTCGCACCATCCGGAGCAACTTCGCCGGTTACTTGTGGTTCCTCAAAGGGGATTTGAGCGAGATTTTGGACCGCGTGGATCCAAACGTTGTAATGAATTCCCTCGAAAAGGGTACTAGGGATAAGAAAATTCTAGGGCTGATAAAATCTGCTCTTGAAGGACAGAAATTGCGCGAGCGTGATGTGTCACACAAGGATGATAATAGTGAGGAGTTGAGGAGGCTTAAGAAGAGGAGAGCTACTAAAAAGAGGATTTTGAATGAGAATGAACCCAAACCCGATCCTTATTGGTTGAGAACGTTCTTTAGTTTCGCCCCTGAGGAGGCTGCCAAAGTGCCTTGTTATGGCCATTGTGGGATTTTGAGTCCTTTGCTTGCTAATGTTTGTCTCGATGAGTTGGACCATTGGATGGAGGATTTGATTGTGGAGTTTTTCAGGCCTTGTGAGTCTGATTCCATATGGAAGTATTCGATTGACGACGGGTGTCATAACCCTGCGTGGCCGGAGTTTGTGCCGTCGAGTGGGAGAGAAAAGACTAGGAAGATGGATTATGTTAGGTATGGGGGACATTTTTTGATTGGGATCCGAGGGCCTAGGGAGGACGCGGTGGAGCTGAGGAAGAAGATTGTTGCATTTTGTGAGAGTGAGTTTCGGGTGAGGTTGGATAATTCCAAGCTGGAGATTGAGCATGTTACTAGGGGGATACAGTTCTTGGACCATGTAATATGCAGGAGGGTGATACACCCTACCTTGCGTTACACGGGTTCTGGAGGTAACATAGTGAGTGAAAAGGGTGTGGGGACTTTGCTTTCTGTTACTGCTTGCTTGCAGCAGTGCATTCGCCAGTTTAGGCGGCTTCAGCTTGTGAAGGGTGATAAGGACCCTGAGCCGCTTCCGTGTACTCCCATGTTGTATTCGGGTCAGGCTCATACGAATTCTCAAATGAATAAGTTCCTGGAGACCATGGCTGATTGGTATAGGTACGCTGATAATCGCAAAAAGGTTGTTGGCTTTTGTGCCTATGTTGTTCGCAGCTCGTTGGCTAAATTGTATGCTGCTAGGTATAGGCTGAAGTCTCGTGCCAAGGTGTATGGAATAGCTTCACGAAATCTTAGCCGGCCTCTGAGGGAGAGCAGCAACAGTTCTGCACCTGAATATTCGGATCTTTTGAGGATGGGGCTGGTTGATGCAATTGAAGGTGTTCAGTTTTCGCACATGTCTCTGATTCCTTCATGTGATTACAGTCCATTCCCCAGGAACTGGATTCCGGATCACGAGAGGGTGTTGCATGAGTATATAAAACTTGAAAATCCCAAGTTTTTCTGTGAGTTGCTCAGATCTGTTAAGAAAAAAGGTTTGACTCTGCCTCAAGATGAAATATCTCAGATGGTATGGGACTACAAAACTCTTGGGTTAGTGGAATCTTCTCAATATCAAGGTTCTGCTTCCAAATTGGTGACCCTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACATGGATTGGTGCAGTGTATCCAAATTTCAAAGAAGAAAGTCTATGGGACAGATATGTCACTGCAATATACTGGTCCATTGTGACTCTTACTACCACTGGCTATGGGGACTTACACACTGAGAACACGACAGAGATGCTGTTTGATATAGCTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTGCACTGGACCAGCCGTACCAGAAATTTTAGAGCCACAGTCAAAGCAGCTTCTGAATTTGCTTCAAGAAATCATTTGCCCCATCGCATACAGGATCAAATGTTGTCACATATATGTTTGAGGTTTAAAACAGAAGGACTAAAGCTGCAAGAACCATTAAATGATCTTCCAAAGGCAGTTCGTTCAAGCATAGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTCTTGCAAGGAGTCTCTCTTGATTTCCTTTTCCAGATGGTTTCAGTTATGGTAGCCGAGTATTTCCCACCCAAGGAAGATGTGATACTGCAGAATGAGTCTTCAACAGAACTTTATGTGTGGTTTCAGGGGCAGTGGTTCAGGGGAAGGCCGTTGCAGTAG 2742 0.4734 MSFRKIVEHLPLRRSTLSSFHLFTSPLSTHSLQQQQQQQQQQQDPHTLMKQDPIQICSSLWVKTFSSPKTTSFPNLTGFLSNFDLWLFAYQRSCAHATGTFPPRNAVHAPLLRDLLSLRNAVLRARFIWNDKTNPLLRAPNDTALSKPLSKRKLQNILQSSEPCFQDRVVQEVLLMILEPVFEPRFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLSEILDRVDPNVVMNSLEKGTRDKKILGLIKSALEGQKLRERDVSHKDDNSEELRRLKKRRATKKRILNENEPKPDPYWLRTFFSFAPEEAAKVPCYGHCGILSPLLANVCLDELDHWMEDLIVEFFRPCESDSIWKYSIDDGCHNPAWPEFVPSSGREKTRKMDYVRYGGHFLIGIRGPREDAVELRKKIVAFCESEFRVRLDNSKLEIEHVTRGIQFLDHVICRRVIHPTLRYTGSGGNIVSEKGVGTLLSVTACLQQCIRQFRRLQLVKGDKDPEPLPCTPMLYSGQAHTNSQMNKFLETMADWYRYADNRKKVVGFCAYVVRSSLAKLYAARYRLKSRAKVYGIASRNLSRPLRESSNSSAPEYSDLLRMGLVDAIEGVQFSHMSLIPSCDYSPFPRNWIPDHERVLHEYIKLENPKFFCELLRSVKKKGLTLPQDEISQMVWDYKTLGLVESSQYQGSASKLVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHTENTTEMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRATVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKLQEPLNDLPKAVRSSIAHHLFFPVVQKVYLLQGVSLDFLFQMVSVMVAEYFPPKEDVILQNESSTELYVWFQGQWFRGRPLQ 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02233 913 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 163 258 IPR000477 -
Cca08g02233 913 SUPERFAMILY cAMP-binding domain-like 788 904 IPR018490 -
Cca08g02233 913 Pfam Type II intron maturase 515 567 IPR024937 GO:0006397
Cca08g02233 913 PANTHER NUCLEAR INTRON MATURASE 2, MITOCHONDRIAL 43 675 - -
Cca08g02233 913 SUPERFAMILY DNA/RNA polymerases 163 451 IPR043502 -
Cca08g02233 913 CDD RT_G2_intron 163 444 - -
Cca08g02233 913 PANTHER NUCLEAR INTRON MATURASE 1, MITOCHONDRIAL-RELATED 43 675 - -
Cca08g02233 913 Pfam Ion transport protein 689 790 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g02233 913 ProSiteProfiles cAMP/cGMP binding motif profile. 861 905 IPR000595 -
Cca08g02233 913 Gene3D - 662 784 - -
Cca08g02233 913 PRINTS EAG/ELK/ERG potassium channel family signature 775 784 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02233 913 PRINTS EAG/ELK/ERG potassium channel family signature 731 748 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02233 913 PRINTS EAG/ELK/ERG potassium channel family signature 757 768 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02233 913 Gene3D Jelly Rolls 829 906 IPR014710 -
Cca08g02233 913 SUPERFAMILY Voltage-gated potassium channels 684 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02233 Cca-Chr8 55818880 55823183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02233 688 904 Ion Channels AT5G46240 76.959 2.04e-116 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02233 - - gmx:100810812 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02233 08 55818880 55823183 Cca08g02233 08 55818880 55823183 ECH