Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02230 ATGTCGCTTTCCAGTGCCAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATTCCAAATGGGAAATATTCCCCATGGAAACTTTTTGTCCAATGATGATCTCCTGCCATCTCTTGGGGCTAGAATAAACCAGGAAACTAGACTCAGAAGATATATAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGTTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCTTTTCTGCCATACAAGGAAGATGCTCTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGTTGACATTCTTTGTCGCTTACCTTGATCACCATTCGTATCTTCTTGTTGATGATCCAAAGAGAATTGCTATCAGGTACTTATCTACTTGGTTTGCTTTTGATGTCTGCTCAACGGTACCGTTTCAATCCTTCAGCTTCCTCTTCTATAATCGTGGTAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGCGTCAGTGCTCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGGTGTACAAAGCTCATTGCTGTGACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATCCCAAAAGAACCTGGATTGGTGCAGTGTATCCAAATTTCAAAGAAGAAAGTCTATGGGACAGATATGTCACTGCAATATACTGGTCCATTGTGACTCTTACTACCACTGGCTATGGGGACTTACACGCTGAGAACACGAGAGAGATGCTGTTTGATATAGCTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTGCACTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTCAAAGCAGCTTCTGAATTTGCTTCAAGAAATCACTTGCCCCATCGCATACAGGATCAAATGTTGTCACATATATGTTTGAGGTTTAAAACAGAAGGACTAAAGCAGCAAGAAACATTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATAGCACACCATCTGTTTTTTCCTTTCGTGCAAAAGGTCTACCTCTTCCAAGGAGTCTCTCATGATTTCCTTTTCCAGATGGTTTCAGATATGGAAGCCGAGTATTTCCCACCCAAGGAAGATGTGATACTGCAGAATGAGTCTTCAACAGAACTTTATGTGTTGGTTTCAGGGGCAGTGGATCTGGTTCGCCGCATCGATGGGCATGATCATGTTCAGGGGAAGGCAGTTGCAGTAGATGCATTTGGAGAGATTGGAGTTTTATATCAAATACCACAGCATTTCACAGTTCGGACCACAGAACTTTCTCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAAATTATAATGGATAACCTTTTAATGAGATTAAAGGGGCGTGAAGATTTCGGCTTTGAATATCCAAGTACAGATTCTGGATTGGTTCCACGTGAACTGCTTCAAGGAGGTAACACGAGAGGAAGCTCTTCTCACGAGTGTACAAATAATTCACATGAGCATTCATTAATGCATGAAGGAGAGCACAAAGATATTAGAAACTCGGAGACCAGTTTGCGTAAGGTGACTAATGATGATCACTTAGTCACTAAACATAACTTGATCCCTAAGCATGATAGAATAGATCCTCATGCGGCTGCACACAAAGGGAATCTAGACATTGTTGAAATTCTGCTTGAAAGAGACGCAAATCCTAATCCAAATTCCACAGGGTGGACGCAAAGAGCTCCAATAAAACAGCCTAAAAACAAGAGCATTTGTGACCAAAAAATGAGTTGTGAAAACAAGAAGTCAGATGAATTTAGAATAGAGATTGCGGAGCCAGAAATCCTTGACCTTGATAAGAATGGCTCAACCAGAAACAGAAGACAAGATGATACTAGGTCTACTAAGTTCCCATTGGAGAAAATGAACACAAACACCAATTCAAGAATTTCTAATTGTCCAAGTGATAGAGAATCGGCAAGGAACACCAAGAAGAGGGTAACAATCCACTTGCTACATGGATGCAAGAGTACCACACCAGGACACCACAGAAAATTAATAATTCTTCCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAACCTCACAAAAGTAATTAATACAGAGAATGCAGAGATAGATGACATAAATGTCATCCGAGATGGAGATCATCTCTTTCTTCTGTGCAGCGATAATGAAATTTTGAGTTCATGA 2340 0.4051 MSLSSAKNFFQRFWLDEFQMGNIPHGNFLSNDDLLPSLGARINQETRLRRYIISPFNPRYRAWELLLVVLVIYSAWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRIAIRYLSTWFAFDVCSTVPFQSFSFLFYNRGSELGFKVFNMFRLWRLRRVSALFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDPKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPFVQKVYLFQGVSHDFLFQMVSDMEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRRIDGHDHVQGKAVAVDAFGEIGVLYQIPQHFTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEYPSTDSGLVPRELLQGGNTRGSSSHECTNNSHEHSLMHEGEHKDIRNSETSLRKVTNDDHLVTKHNLIPKHDRIDPHAAAHKGNLDIVEILLERDANPNPNSTGWTQRAPIKQPKNKSICDQKMSCENKKSDEFRIEIAEPEILDLDKNGSTRNRRQDDTRSTKFPLEKMNTNTNSRISNCPSDRESARNTKKRVTIHLLHGCKSTTPGHHRKLIILPDSLEELLKIAGEKFGGFNLTKVINTENAEIDDINVIRDGDHLFLLCSDNEILSS 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02230 779 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g02230 779 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Cca08g02230 779 Gene3D Jelly Rolls 371 503 IPR014710 -
Cca08g02230 779 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Cca08g02230 779 SMART cnmp_10 378 495 IPR000595 -
Cca08g02230 779 Pfam KHA, dimerisation domain of potassium ion channel 700 769 IPR021789 -
Cca08g02230 779 MobiDBLite consensus disorder prediction 673 692 - -
Cca08g02230 779 Gene3D - 61 301 - -
Cca08g02230 779 SUPERFAMILY cAMP-binding domain-like 305 498 IPR018490 -
Cca08g02230 779 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Cca08g02230 779 CDD CAP_ED 378 491 IPR000595 -
Cca08g02230 779 MobiDBLite consensus disorder prediction 655 672 - -
Cca08g02230 779 MobiDBLite consensus disorder prediction 655 697 - -
Cca08g02230 779 ProSiteProfiles Ankyrin repeat profile. 584 610 IPR002110 GO:0005515
Cca08g02230 779 MobiDBLite consensus disorder prediction 524 550 - -
Cca08g02230 779 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02230 779 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02230 779 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02230 779 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02230 779 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02230 779 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02230 779 ProSiteProfiles KHA domain profile. 701 779 IPR021789 -
Cca08g02230 779 Gene3D Helix hairpin bin 302 368 - -
Cca08g02230 779 MobiDBLite consensus disorder prediction 605 625 - -
Cca08g02230 779 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 779 - -
Cca08g02230 779 PANTHER POTASSIUM CHANNEL AKT1 1 779 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02230 Cca-Chr8 55793674 55797451 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02230 1 774 Ion Channels AT4G18290 59.278 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02230 K21867 - gmx:100811356 1399.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02230 08 55793674 55797451 Cca08g02230 08 55793674 55797451 ECH