LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g02230	ATGTCGCTTTCCAGTGCCAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATTCCAAATGGGAAATATTCCCCATGGAAACTTTTTGTCCAATGATGATCTCCTGCCATCTCTTGGGGCTAGAATAAACCAGGAAACTAGACTCAGAAGATATATAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGTTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCTTTTCTGCCATACAAGGAAGATGCTCTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGTTGACATTCTTTGTCGCTTACCTTGATCACCATTCGTATCTTCTTGTTGATGATCCAAAGAGAATTGCTATCAGGTACTTATCTACTTGGTTTGCTTTTGATGTCTGCTCAACGGTACCGTTTCAATCCTTCAGCTTCCTCTTCTATAATCGTGGTAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGCGTCAGTGCTCTGTTTGCAAGACTTGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGGTGTACAAAGCTCATTGCTGTGACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATCCCAAAAGAACCTGGATTGGTGCAGTGTATCCAAATTTCAAAGAAGAAAGTCTATGGGACAGATATGTCACTGCAATATACTGGTCCATTGTGACTCTTACTACCACTGGCTATGGGGACTTACACGCTGAGAACACGAGAGAGATGCTGTTTGATATAGCTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTGCACTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTCAAAGCAGCTTCTGAATTTGCTTCAAGAAATCACTTGCCCCATCGCATACAGGATCAAATGTTGTCACATATATGTTTGAGGTTTAAAACAGAAGGACTAAAGCAGCAAGAAACATTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATAGCACACCATCTGTTTTTTCCTTTCGTGCAAAAGGTCTACCTCTTCCAAGGAGTCTCTCATGATTTCCTTTTCCAGATGGTTTCAGATATGGAAGCCGAGTATTTCCCACCCAAGGAAGATGTGATACTGCAGAATGAGTCTTCAACAGAACTTTATGTGTTGGTTTCAGGGGCAGTGGATCTGGTTCGCCGCATCGATGGGCATGATCATGTTCAGGGGAAGGCAGTTGCAGTAGATGCATTTGGAGAGATTGGAGTTTTATATCAAATACCACAGCATTTCACAGTTCGGACCACAGAACTTTCTCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAAATTATAATGGATAACCTTTTAATGAGATTAAAGGGGCGTGAAGATTTCGGCTTTGAATATCCAAGTACAGATTCTGGATTGGTTCCACGTGAACTGCTTCAAGGAGGTAACACGAGAGGAAGCTCTTCTCACGAGTGTACAAATAATTCACATGAGCATTCATTAATGCATGAAGGAGAGCACAAAGATATTAGAAACTCGGAGACCAGTTTGCGTAAGGTGACTAATGATGATCACTTAGTCACTAAACATAACTTGATCCCTAAGCATGATAGAATAGATCCTCATGCGGCTGCACACAAAGGGAATCTAGACATTGTTGAAATTCTGCTTGAAAGAGACGCAAATCCTAATCCAAATTCCACAGGGTGGACGCAAAGAGCTCCAATAAAACAGCCTAAAAACAAGAGCATTTGTGACCAAAAAATGAGTTGTGAAAACAAGAAGTCAGATGAATTTAGAATAGAGATTGCGGAGCCAGAAATCCTTGACCTTGATAAGAATGGCTCAACCAGAAACAGAAGACAAGATGATACTAGGTCTACTAAGTTCCCATTGGAGAAAATGAACACAAACACCAATTCAAGAATTTCTAATTGTCCAAGTGATAGAGAATCGGCAAGGAACACCAAGAAGAGGGTAACAATCCACTTGCTACATGGATGCAAGAGTACCACACCAGGACACCACAGAAAATTAATAATTCTTCCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAACCTCACAAAAGTAATTAATACAGAGAATGCAGAGATAGATGACATAAATGTCATCCGAGATGGAGATCATCTCTTTCTTCTGTGCAGCGATAATGAAATTTTGAGTTCATGA	2340	0.4051	MSLSSAKNFFQRFWLDEFQMGNIPHGNFLSNDDLLPSLGARINQETRLRRYIISPFNPRYRAWELLLVVLVIYSAWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRIAIRYLSTWFAFDVCSTVPFQSFSFLFYNRGSELGFKVFNMFRLWRLRRVSALFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDPKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPFVQKVYLFQGVSHDFLFQMVSDMEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRRIDGHDHVQGKAVAVDAFGEIGVLYQIPQHFTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEYPSTDSGLVPRELLQGGNTRGSSSHECTNNSHEHSLMHEGEHKDIRNSETSLRKVTNDDHLVTKHNLIPKHDRIDPHAAAHKGNLDIVEILLERDANPNPNSTGWTQRAPIKQPKNKSICDQKMSCENKKSDEFRIEIAEPEILDLDKNGSTRNRRQDDTRSTKFPLEKMNTNTNSRISNCPSDRESARNTKKRVTIHLLHGCKSTTPGHHRKLIILPDSLEELLKIAGEKFGGFNLTKVINTENAEIDDINVIRDGDHLFLLCSDNEILSS	779

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g02230	779	Pfam	Ion transport protein	61	307	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Cca08g02230	779	ProSiteProfiles	cAMP/cGMP binding motif profile.	378	497	IPR000595	-
	Cca08g02230	779	Gene3D	Jelly Rolls	371	503	IPR014710	-
	Cca08g02230	779	Pfam	Cyclic nucleotide-binding domain	398	482	IPR000595	-
	Cca08g02230	779	SMART	cnmp_10	378	495	IPR000595	-
	Cca08g02230	779	Pfam	KHA, dimerisation domain of potassium ion channel	700	769	IPR021789	-
	Cca08g02230	779	MobiDBLite	consensus disorder prediction	673	692	-	-
	Cca08g02230	779	Gene3D	-	61	301	-	-
	Cca08g02230	779	SUPERFAMILY	cAMP-binding domain-like	305	498	IPR018490	-
	Cca08g02230	779	SUPERFAMILY	Voltage-gated potassium channels	55	301	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g02230	Cca-Chr8	55793674	55797451	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g02230	1	774	Ion Channels	AT4G18290	59.278	0.0	858

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g02230	K21867		-	gmx:100811356	1399.8

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca08g02230	08	55793674	55797451	Cca08g02230	08	55793674	55797451	ECH

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