Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02227 ATGGGGGTTGCTGCTGCTGCAGCTTCAAATATTATTAAACAAGTCCATTGTCTTCTTCCTGACTACGACAAAATAGTGTCTGCACTGCTTACAGAGGGTCTATGGATGCTTCCAAAGACATGTAAATTTACTCCAGGTGTTCCAATTGATCCTATGATGTCCAAGGCAACAAAGGGTGTATCAGAAGTTCTAAATAAATTCCAGAATGTGGAGTTTACCGTGAATACAAGTACGACGGAGAGCGCGCCCAGATACATTACATGGAGAATGACTCAGTTGAGGTTTACAGTAGACACCAAGAACGGAACACTGACAAGTATCCTGACGTTGTTGCTGCAGTTTCAAGTACACCAGTTGCTTCCCAGTACAACTTTCAATTTTGCAGTTTCTGATATTTGCGGTTCAGTGAACAGGTTAAAGAAAGCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGCGTATGATCGTGAAAAACTTCAAATTGAATCTTTCCAGAAGCTTAGTACTCGGGCTCGCAAGAAAGTAGATATCAAGGATGTAAAGGTTGATGTCTGTATATTTGCTTTTGATTTGTTGTATCTCAATGGCCAAGAACTTCTGCAGGAAAATCTGAGAGTCCGTAGAGAGTTTGCAACATCAATAACATCAAATGATGTAGAGGAAATACAGAAATTTCTTGACAAAGCTGTTAATGCAAGTTGTGAGGGATTAATTGTCAAAACATTAAACGAAGATGCTACATATGAACCTGCCAAGCGTTCTCTCAACTGGCTAAAATTGAAGAAAGATTATCTGGAAAAGAGACTCACTAGATTTGGTACCTATTGCTGCTTTGCTTTCCATGGTCGTGGGAAACGTACAGGTGCAGACCTGACCATTAGCCCTATTTACCGTGCTGCAGTGGGCATAGTAGATTCGGACAAGGCAATTGATTGGCTTGGAAATGTCACAAGTTCTTTTCTTTATTTTCGCTCTCTGTTTTGA 990 0.4 MGVAAAAASNIIKQVHCLLPDYDKIVSALLTEGLWMLPKTCKFTPGVPIDPMMSKATKGVSEVLNKFQNVEFTVNTSTTESAPRYITWRMTQLRFTVDTKNGTLTSILTLLLQFQVHQLLPSTTFNFAVSDICGSVNRLKKATVSSFVLDCEIVAYDREKLQIESFQKLSTRARKKVDIKDVKVDVCIFAFDLLYLNGQELLQENLRVRREFATSITSNDVEEIQKFLDKAVNASCEGLIVKTLNEDATYEPAKRSLNWLKLKKDYLEKRLTRFGTYCCFAFHGRGKRTGADLTISPIYRAAVGIVDSDKAIDWLGNVTSSFLYFRSLF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02227 329 ProSitePatterns ATP-dependent DNA ligase signature 2. 237 263 IPR016059 GO:0003909
Cca08g02227 329 Gene3D DNA ligase/mRNA capping enzyme 122 265 - -
Cca08g02227 329 Gene3D - 3 53 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cca08g02227 329 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 130 290 - -
Cca08g02227 329 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 7 74 - -
Cca08g02227 329 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 45 268 - -
Cca08g02227 329 ProSiteProfiles ATP-dependent DNA ligase family profile. 179 290 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca08g02227 329 Pfam ATP dependent DNA ligase domain 130 263 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cca08g02227 329 CDD Adenylation_DNA_ligase_I_Euk 40 266 - -
Cca08g02227 329 PANTHER DNA LIGASE 1 130 290 - -
Cca08g02227 329 PANTHER DNA LIGASE 1 7 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02227 Cca-Chr8 55742139 55745601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02227 8 290 Core DNA Replication Machinery Family AT1G08130 52.189 3.18e-93 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02227 K10747 - gmx:100803989 316.235