Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca08g02223 | ATGGAGCAGTACGGGCGGTCGAGCGAAGGTTCGAGGTCTGATCCGTCGGCGGAATGGGCCGGGGCCGAAGAGGGTATGTGGCAATTGGGATTGGGTGCTGCGGAGGAGTCGTATCCGCAACGCCCCGATGAGGCTGATTGCACTTACTATTTGAGGACCGGTTTCTGTGGCTTCGGTTCCCGCTGTCGCTTCAACCACCCTCGTGACCGTGCCGCGGTTGTTGGAGCTGAGAGAGCTGCAGGGGACTATCCCGAGCGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGGACGTGCAAGTTTGGTTCCTCTTGCAAGTACCATCATCCTCGGCAGGCTGGAGCTGCTGCTACACCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGATGAGAAAGAGTGTTCCTATTATGTGAAAACGGGGCAATGCAAGTTTGGCGCAACTTGTAAATTCCATCACCCAGTTCCTGCTGGTGTCCAGATTCCAGCACCGTCACCAGTTGCTCCCATTTCGCCTCTACCGGTACCGGTACCTTCACCGTTATATTCAACCATGCAGCCCCCACCCGGTCCTTCATCCCAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTATGCTGCCAGGCTCATTAGTCCAGAGCCTCTATGGACCCGTGGTAGTGTCCCCTGCCATGGTGCCATTTTCTGGCTGGGGTCCTTATCAAGCTTCTGCAACAAGCCCTGTACTTCCGTCTGGTACTCCATCTAATGTTGGTTCAACGCAGCTTTATGGTATAACCCAGCTACCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAACCTTCTGGTTCCTCTGTTGGTCCTTCAAGCAGTAGTCAGAAAGAGCAGGCATTTCCGGAAAGGTCTAATCAACCAGAATATCGGTATTACCCCAAAACAGGGGAAGTTAAATTTGGTCCATCGTATAGGTATCACCCTCCACCAGACACGAGTGCACCAAAAGCAAATGTGGTTCTTAGTTCTGCAGGTCTTCCTTTGCGCCCGGGGGCACCAGCTTGCACTCATTATGCACAACATGGAGCATGTAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACCGAGTTATAGTCCATCTGCTTCTTCCATGGCTGACATGGCAGTTGCAGCCTATCATGTGGGTTCAACAATTAGTACCGTTGCTCCATCTTCATTGTCAGAGTTGCGGCCTGAACTTTCCTCAGGACCCAGCAAGGATTCTGTTCCATCCAGAATGCTTTCATCAACGGGCATGTTGACTGGTGGACCTGTTTCTCAATCAAGCACTCAATCATCTTCTCAGAGTTCGGGTCCTTTAGCAGCACCTGTCACTACTGCCACAAGTAGCAATGTACCTCACACCTCAAGCTAA | 1410 | 0.5156 | MEQYGRSSEGSRSDPSAEWAGAEEGMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRFNHPRDRAAVVGAERAAGDYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRQAGAAATPVSLNYYGYPLRPDEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPISPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSLYGPVVVSPAMVPFSGWGPYQASATSPVLPSGTPSNVGSTQLYGITQLPSSAAAYPGPYQPSGSSVGPSSSSQKEQAFPERSNQPEYRYYPKTGEVKFGPSYRYHPPPDTSAPKANVVLSSAGLPLRPGAPACTHYAQHGACKFGSACKFDHPMGSPSYSPSASSMADMAVAAYHVGSTISTVAPSSLSELRPELSSGPSKDSVPSRMLSSTGMLTGGPVSQSSTQSSSQSSGPLAAPVTTATSSNVPHTSS | 469 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca08g02223 | 469 | SUPERFAMILY | CCCH zinc finger | 43 | 70 | IPR036855 | GO:0046872 | |
Cca08g02223 | 469 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 347 | 371 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 134 | 158 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 89 | 113 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 43 | 68 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | Gene3D | - | 39 | 116 | - | - | |
Cca08g02223 | 469 | MobiDBLite | consensus disorder prediction | 271 | 307 | - | - | |
Cca08g02223 | 469 | SUPERFAMILY | CCCH zinc finger | 89 | 114 | IPR036855 | GO:0046872 | |
Cca08g02223 | 469 | ProSiteProfiles | Zinc finger C3H1-type profile. | 132 | 160 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | MobiDBLite | consensus disorder prediction | 407 | 469 | - | - | |
Cca08g02223 | 469 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 458 | - | - | |
Cca08g02223 | 469 | SUPERFAMILY | CCCH zinc finger | 133 | 159 | IPR036855 | GO:0046872 | |
Cca08g02223 | 469 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 458 | - | - | |
Cca08g02223 | 469 | Gene3D | - | 117 | 165 | - | - | |
Cca08g02223 | 469 | ProSiteProfiles | Zinc finger C3H1-type profile. | 41 | 69 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | ProSiteProfiles | Zinc finger C3H1-type profile. | 344 | 372 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | SUPERFAMILY | CCCH zinc finger | 348 | 372 | IPR036855 | GO:0046872 | |
Cca08g02223 | 469 | MobiDBLite | consensus disorder prediction | 279 | 297 | - | - | |
Cca08g02223 | 469 | ProSiteProfiles | Zinc finger C3H1-type profile. | 86 | 114 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | SMART | c3hfinal6 | 344 | 371 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | SMART | c3hfinal6 | 134 | 159 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | SMART | c3hfinal6 | 41 | 68 | IPR000571 | GO:0046872 | |
Cca08g02223 | 469 | SMART | c3hfinal6 | 86 | 113 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca08g02223 | Cca-Chr8 | 55646430 | 55653073 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca08g02223 | 1 | 421 | C2H2 Transcription Factor Family | AT5G18550 | 55.102 | 5.74e-140 | 408 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Cca08g02223 | zf-CCCH | 5.5e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca08g02223 | - | - | gmx:100812433 | 712.99 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca08g02223 | 08 | 55646430 | 55653073 | Cca08g02223 | 08 | 55646430 | 55653073 | ECH | |
Cca11g02799 | 11 | 55380981 | 55385690 | Cca08g02223 | 08 | 55646430 | 55653073 | PCT |