Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02223 ATGGAGCAGTACGGGCGGTCGAGCGAAGGTTCGAGGTCTGATCCGTCGGCGGAATGGGCCGGGGCCGAAGAGGGTATGTGGCAATTGGGATTGGGTGCTGCGGAGGAGTCGTATCCGCAACGCCCCGATGAGGCTGATTGCACTTACTATTTGAGGACCGGTTTCTGTGGCTTCGGTTCCCGCTGTCGCTTCAACCACCCTCGTGACCGTGCCGCGGTTGTTGGAGCTGAGAGAGCTGCAGGGGACTATCCCGAGCGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGGACGTGCAAGTTTGGTTCCTCTTGCAAGTACCATCATCCTCGGCAGGCTGGAGCTGCTGCTACACCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGATGAGAAAGAGTGTTCCTATTATGTGAAAACGGGGCAATGCAAGTTTGGCGCAACTTGTAAATTCCATCACCCAGTTCCTGCTGGTGTCCAGATTCCAGCACCGTCACCAGTTGCTCCCATTTCGCCTCTACCGGTACCGGTACCTTCACCGTTATATTCAACCATGCAGCCCCCACCCGGTCCTTCATCCCAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTATGCTGCCAGGCTCATTAGTCCAGAGCCTCTATGGACCCGTGGTAGTGTCCCCTGCCATGGTGCCATTTTCTGGCTGGGGTCCTTATCAAGCTTCTGCAACAAGCCCTGTACTTCCGTCTGGTACTCCATCTAATGTTGGTTCAACGCAGCTTTATGGTATAACCCAGCTACCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAACCTTCTGGTTCCTCTGTTGGTCCTTCAAGCAGTAGTCAGAAAGAGCAGGCATTTCCGGAAAGGTCTAATCAACCAGAATATCGGTATTACCCCAAAACAGGGGAAGTTAAATTTGGTCCATCGTATAGGTATCACCCTCCACCAGACACGAGTGCACCAAAAGCAAATGTGGTTCTTAGTTCTGCAGGTCTTCCTTTGCGCCCGGGGGCACCAGCTTGCACTCATTATGCACAACATGGAGCATGTAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACCGAGTTATAGTCCATCTGCTTCTTCCATGGCTGACATGGCAGTTGCAGCCTATCATGTGGGTTCAACAATTAGTACCGTTGCTCCATCTTCATTGTCAGAGTTGCGGCCTGAACTTTCCTCAGGACCCAGCAAGGATTCTGTTCCATCCAGAATGCTTTCATCAACGGGCATGTTGACTGGTGGACCTGTTTCTCAATCAAGCACTCAATCATCTTCTCAGAGTTCGGGTCCTTTAGCAGCACCTGTCACTACTGCCACAAGTAGCAATGTACCTCACACCTCAAGCTAA 1410 0.5156 MEQYGRSSEGSRSDPSAEWAGAEEGMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRFNHPRDRAAVVGAERAAGDYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRQAGAAATPVSLNYYGYPLRPDEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPISPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSLYGPVVVSPAMVPFSGWGPYQASATSPVLPSGTPSNVGSTQLYGITQLPSSAAAYPGPYQPSGSSVGPSSSSQKEQAFPERSNQPEYRYYPKTGEVKFGPSYRYHPPPDTSAPKANVVLSSAGLPLRPGAPACTHYAQHGACKFGSACKFDHPMGSPSYSPSASSMADMAVAAYHVGSTISTVAPSSLSELRPELSSGPSKDSVPSRMLSSTGMLTGGPVSQSSTQSSSQSSGPLAAPVTTATSSNVPHTSS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02223 469 SUPERFAMILY CCCH zinc finger 43 70 IPR036855 GO:0046872
Cca08g02223 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 371 IPR000571 GO:0046872
Cca08g02223 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 158 IPR000571 GO:0046872
Cca08g02223 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Cca08g02223 469 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 68 IPR000571 GO:0046872
Cca08g02223 469 Gene3D - 39 116 - -
Cca08g02223 469 MobiDBLite consensus disorder prediction 271 307 - -
Cca08g02223 469 SUPERFAMILY CCCH zinc finger 89 114 IPR036855 GO:0046872
Cca08g02223 469 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Cca08g02223 469 MobiDBLite consensus disorder prediction 407 469 - -
Cca08g02223 469 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 458 - -
Cca08g02223 469 SUPERFAMILY CCCH zinc finger 133 159 IPR036855 GO:0046872
Cca08g02223 469 PANTHER PROTEIN PHOSPHATASE RELATED 1 458 - -
Cca08g02223 469 Gene3D - 117 165 - -
Cca08g02223 469 ProSiteProfiles Zinc finger C3H1-type profile. 41 69 IPR000571 GO:0046872
Cca08g02223 469 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Cca08g02223 469 SUPERFAMILY CCCH zinc finger 348 372 IPR036855 GO:0046872
Cca08g02223 469 MobiDBLite consensus disorder prediction 279 297 - -
Cca08g02223 469 ProSiteProfiles Zinc finger C3H1-type profile. 86 114 IPR000571 GO:0046872
Cca08g02223 469 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Cca08g02223 469 SMART c3hfinal6 134 159 IPR000571 GO:0046872
Cca08g02223 469 SMART c3hfinal6 41 68 IPR000571 GO:0046872
Cca08g02223 469 SMART c3hfinal6 86 113 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02223 Cca-Chr8 55646430 55653073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02223 1 421 C2H2 Transcription Factor Family AT5G18550 55.102 5.74e-140 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g02223 zf-CCCH 5.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02223 - - gmx:100812433 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02223 08 55646430 55653073 Cca08g02223 08 55646430 55653073 ECH
Cca11g02799 11 55380981 55385690 Cca08g02223 08 55646430 55653073 PCT