Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02222 ATGTCCACTTCTAAAACCTCAAATACTTCCCTCAAAGGATATGAGTCCAACCAAAGCCAAATGAGTTTGTCTCCTCTTAAACTTAACACATCTCCTTGTGGTGAGAGAAGAGGGCGTGGAAAGCAAGCAGAACCTGGAAGGTTTCTAGGAGTAAGGAGGCGTCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTATAACCAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCCCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCATATACTCCAAAGATTCCAACACTTTCCACAATGTTGGTGATTCTCAACCTCTCTTGCCACCTTCACAGTTTCTCACAAGCACTCACAACACACAAAATCCAACCATTCAAAGTGGCCTATCTCAGCTTGGTACTATAGCTTCCCATATTGAAAACCCTTCTGACATGAGTGCATATGGATCACCACCTCAGGATGAAAATTTCTTCTTCTCAAGTGACTCCAACTCAGGCTATCTTGAATGCATAGTTCCTGATAATTGCTTCAGGAAGAGCAATGCCAGTGCTTCAAGTCATGTTAACTCAAACTCCATGCAGGTTAAGTCACATTTTGACACCACTCAAGAAGCCTTGAACATGCAAACAACAGTGGAATCTAACTTTGCAGATTTTTCTTACCCTAGTGAAGGATTATCATGGGATAATCAACGACCATGGGGTTGTAGTACTTCCAATGAACTAGCAGCTATGTTTAGCAATCCATCAAGGGTTGAGGAACCCTTCAGTGTGATGACTCAGGCTGAGGCTGATGCTTCTTCATCATCACTTCCTCCCTTTGGAGATGTGGACTTGGGATACTCACTCTTCTGA 897 0.4337 MSTSKTSNTSLKGYESNQSQMSLSPLKLNTSPCGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPITKERHWLGTFDTAQEAALAYDRAALSMKGCQARTNFIYSKDSNTFHNVGDSQPLLPPSQFLTSTHNTQNPTIQSGLSQLGTIASHIENPSDMSAYGSPPQDENFFFSSDSNSGYLECIVPDNCFRKSNASASSHVNSNSMQVKSHFDTTQEALNMQTTVESNFADFSYPSEGLSWDNQRPWGCSTSNELAAMFSNPSRVEEPFSVMTQAEADASSSSLPPFGDVDLGYSLF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02222 298 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Cca08g02222 298 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Cca08g02222 298 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 298 - -
Cca08g02222 298 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Cca08g02222 298 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Cca08g02222 298 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Cca08g02222 298 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Cca08g02222 298 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Cca08g02222 298 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Cca08g02222 298 MobiDBLite consensus disorder prediction 1 45 - -
Cca08g02222 298 MobiDBLite consensus disorder prediction 1 29 - -
Cca08g02222 298 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02222 Cca-Chr8 55643200 55644096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02222 1 291 AP2-EREBP Transcription Factor Family AT5G18560 39.429 3.04e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca08g02222 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02222 - - gmx:102664746 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02800 11 55387710 55388799 Cca08g02222 08 55643200 55644096 PCT